Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 145 7e-30 seq124 131 2e-25 seq14 127 2e-24 seq15 125 6e-24 seq21 113 4e-20 >seq4 Length=5448771 Score = 145 bits (160), Expect = 7e-30 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| ||||| | || | ||| |||||| || |||||||||||||| Sbjct 199547 CCACCACGGAGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCT 199606 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| |||| || ||||||||||| ||||| || | ||||||||||||| || Sbjct 199607 AGGGTTCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGT 199666 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||||| |||||| ||||| | | | | || || |||| || Sbjct 199667 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTC---TCA 199723 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || || || |||||||| ||||||||||| |||||||| Sbjct 199724 ACCTCGAGAGTTATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | ||| | ||| | |||| || ||| || || |||||||| ||||| Sbjct 205222 CCTCCACGGAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCA 205281 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || |||||||||||||| ||||| || | ||||||||||||| || Sbjct 205282 AGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGT 205341 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||||| ||||| ||||| | | | | || || ||| || Sbjct 205342 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTC---TCG 205398 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || || || || |||| |||||||| || |||||||| Sbjct 205399 ACCTCGAGAGTTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 >seq124 Length=632428 Score = 131 bits (144), Expect = 2e-25 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| ||||| | | |||||| || | ||| ||| ||||| ||||||||||||||| Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| |||| || |||||||| || || || || | || ||||||||||| ||| Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| ||| ||| | ||| | | | | | || || ||| || Sbjct 447815 ATTCCTTCCTTGTCC-TGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAAC 447873 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 ||| | || || ||||| || || | |||||||||||||||||||| ||||| Sbjct 447874 CTCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCA-TCTGT 447925 Score = 105 bits (116), Expect = 6e-18 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| || || ||| ||||||||||| || |||||| Sbjct 354486 CCACCACGAAGACGCAGTACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCC 354427 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | ||| ||||| ||||| || || || ||||||| ||||||||| | || Sbjct 354426 AAAGTCCTGCCGTGTTCCAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGTGGG 354367 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || || ||| | | ||||||| |||| | | | | || || ||| |||| Sbjct 354366 ATGCCCT-CTTTTTCTTGATCTTGGCYTTCACATTGTCGATGGTATCAGAGCT---TTCC 354311 Query 35687 A-CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | |||||| ||||| ||||| || || | |||||||| || || ||||| Sbjct 354310 ACCCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | | ||||||||| || || ||||| ||||| ||||| || | Sbjct 447465 TTCCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAG 447524 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || || || || |||||||| || |||| || ||||||||||| | Sbjct 447525 CCAGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTG 447584 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 ||| | ||| || || |||||| ||||| | | | | || || ||| || Sbjct 447585 GAATACCCTCTTTATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCT---TT 447641 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||||| ||||| ||||| || || | |||||||| || || ||||| Sbjct 447642 CCACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||||||||| | || || | || || |||||||| || || || Sbjct 447274 CTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAA 447333 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| | ||| | | |||||||| ||||| || | | | Sbjct 447334 AATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTAGCTTTGACATT 447393 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| ||||||| ||||| || || ||||| | ||||| || Sbjct 447394 GTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGAC 447453 Query 35725 AAATATCTGCATTC 35738 || || ||||||| Sbjct 447454 GAAAATTTGCATTC 447467 >seq14 Length=2855554 Score = 127 bits (140), Expect = 2e-24 Identities = 148/196 (76%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||||||||| ||||| |||||| | || ||||| || || || ||||| Sbjct 999763 CTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCAAA 999704 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| | ||| || || | ||||| | ||||||||| |||||| ||||| || Sbjct 999703 GATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTTGCCTTCA-CGT 999645 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | ||||| ||| ||| ||||||| ||||||||| || || |||| || | Sbjct 999644 TGTCGATTGTGTCCGAGCT---TTCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCT 999588 Query 35721 TCACAAATATCTGCAT 35736 ||||||| |||||||| Sbjct 999587 TCACAAAGATCTGCAT 999572 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | | ||||||||| | || |||||||| ||||||||||| || Sbjct 999570 CCACCGCGCAATCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 999511 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || || || ||||| || || || ||||||| ||| ||||| | || Sbjct 999510 AAAGTTCTGCCATCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGG 999451 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || ||||||||| |||||| ||||| | | | | || || |||| ||| Sbjct 999450 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTC---TCC 999394 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||||| || || || ||||| ||||||||||| |||||||| Sbjct 999393 ACTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || |||| | |||||| || | || ||||| || ||||||||||| ||| Sbjct 999342 CCGCCTCGCAACCGAAGCACCAAGTGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCC 999283 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | | || || || |||||||| ||||| |||| || ||| ||||| | || Sbjct 999282 AGAGTCCTACCATCTTCTAGTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGG 999223 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || ||||||||| |||||| |||| | | | | || || |||| ||| Sbjct 999222 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTATCAGAGCTC---TCC 999166 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| |||||||| || || ||||| || |||||||| |||||||| Sbjct 999165 ACTTCCAAAGTGATCGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 999116 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | || | ||||||||| || ||| || || || || ||||| || || Sbjct 998886 CCCCCACGAAGCCGAAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCA 998827 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||||||||| ||||| |||| || ||| || || | ||| Sbjct 998826 AGAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGG 998767 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| || ||| || ||||| | | | | ||| || ||||||| Sbjct 998766 ATACCCTCCTTATCTTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACC 998707 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| ||||| || || | || ||||||||||| ||||| Sbjct 998706 TCAAGCGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 998660 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || | ||||| ||| | ||| ||||| || || ||||||||||| Sbjct 998658 CCACCGCGAAGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCA 998599 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || || || |||||||| || || || | || |||||||| | |||| Sbjct 998598 AGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGA 998539 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA---TTCC 35686 | | ||| || || ||||||| ||| | | | | | || || ||| |||| Sbjct 998538 ATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATC---CGAACTTTCC 998482 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| ||||| || || | ||||||||| || || ||||| Sbjct 998481 ACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 >seq15 Length=2492501 Score = 125 bits (138), Expect = 6e-24 Identities = 149/198 (75%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| |||| || | | | || ||||||||||| || ||||| Sbjct 255647 CTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAA 255706 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||||| | |||||||||| ||||| ||||| || Sbjct 255707 GATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGT 255765 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | ||| || |||| |||||||||| ||||| || || || || | || | Sbjct 255766 TGTCAATCGTATCTGAGCTC---TCCACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTCT 255822 Query 35721 TCACAAATATCTGCATTC 35738 |||| || |||||||||| Sbjct 255823 TCACGAAGATCTGCATTC 255840 >seq21 Length=2013095 Score = 113 bits (124), Expect = 4e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| |||||||| || | || | | || ||||||||||| || || || Sbjct 1809875 CTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAA 1809816 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 |||| || ||||| |||| ||||| | |||||||||| ||| ||| || |||| | Sbjct 1809815 AATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTCACAT 1809757 Query 35664 TTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | ||||| |||| |||||||||| ||||| || || || ||||| |||| Sbjct 1809756 TGTCAATGGTGTCGGAGCTC---TCCACCTCCAGAGTGATGGTCTTCCCAGTCAAGGTTT 1809700 Query 35721 TCACAAATATCTGCAT 35736 ||||||| || ||||| Sbjct 1809699 TCACAAAGATTTGCAT 1809684 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || || ||| |||||| || ||||| || ||||||| || | |||| || Sbjct 1809665 CACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTC 1809606 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| || ||||||||| | || | | ||| ||||| Sbjct 1809605 CAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTG 1809546 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGT 35703 |||||| ||| | | | | | ||||| ||| || ||||||| || || || Sbjct 1809545 GATCTTAGCCTTTACATTGTCTATGGTGTC---CGAACTCTCAACCTCCAGGGTAATGGT 1809489 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || ||||| || || || || |||||||| Sbjct 1809488 TTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450787672064160