Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 132 5e-26 seq124 122 9e-23 seq21 104 2e-17 seq14 100 3e-16 >seq4 Length=5448771 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 134502 AACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCG 134561 ||||||||||| |||||||| ||||| || |||||||| ||| | | ||| | ||| Sbjct 199562 AACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCC 199621 Query 134562 TCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCT 134621 || ||||| || || ||||| || | ||||||||| || |||||||| || || || || Sbjct 199622 TCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCC 199681 Query 134622 TGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTT 134681 ||||| ||| || || ||| | || ||||| || || |||||||| ||||| Sbjct 199682 TGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTC 199741 Query 134682 TTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || ||||| || || || ||||| ||| Sbjct 199742 TTCCCCGTCAACGTTTTCACAAAGATCTGCATATTG 199777 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| | | ||| |||||||| ||||| || || || |||||||||||| || Sbjct 205222 CCTCCACGGAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCA 205281 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || ||||| || || |||||||| | ||||||||| || |||||| Sbjct 205282 AGAGTTCGACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGT 205341 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || || | || || || || || Sbjct 205342 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACC 205401 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || || || | ||||| ||||| || ||||| Sbjct 205402 TCGAGAGTTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 >seq124 Length=632428 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || || | ||| || || || || || ||||||||||||||||| ||| Sbjct 447237 TTCCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGG 447296 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| || | || || ||||| |||||||| ||||| | | ||||| || || | Sbjct 447297 CAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAG 447356 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || |||||||| || |||||| ||| | ||||||||| ||| | Sbjct 447357 GGATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAA 447416 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | || || || || || || | ||||| ||||||||||||||| Sbjct 447417 CCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCATT 447466 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCG-CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || || || |||||||| || |||||| |||| | || ||| || || || || || Sbjct 447041 GTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCC-GTCTTCCAGTTGCTTTCC 447099 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || ||||||| | |||||| || || || ||||| ||||| ||||||||||| || Sbjct 447100 AGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCCTT 447159 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || ||| | || || || || || || ||||| || ||||| || ||||| || Sbjct 447160 CACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAGGT 447219 Query 134696 TTTAACGAAAATTTGCATT 134714 || || ||||| |||||| Sbjct 447220 CTTCACAAAAATCTGCATT 447238 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCG-CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || || || ||||||||||| |||||| |||| | || || || || || || || Sbjct 354456 GTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCC-GTGTTCCAGTTGCTTTCC 354398 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || |||||||| | |||||| || || || ||||| ||||||||||| || || || Sbjct 354397 AGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTTCTTG-ATCTTGGCYTT 354339 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCA-CGTCGAGAGTAATGGTTTTACCGGTTAAAG 134694 || ||| | || || || ||||| | || | || |||||||| || || | | Sbjct 354338 CACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGATGGTTTTTCCAGTGAGGG 354279 Query 134695 TTTTAACGAAAATTTGCAT 134713 |||| ||||| |||||||| Sbjct 354278 TTTTCACGAAGATTTGCAT 354260 >seq21 Length=2013095 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| || | ||| | ||| | || || ||||| || ||||| |||||| | Sbjct 1809682 CCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCC 1809623 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| || || || || |||| | |||||| || || || Sbjct 1809622 AGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1809563 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| || || || || ||| | ||||| || || || Sbjct 1809562 ATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGTCTATGGTGTCCGAACTCTCAACC 1809503 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||||||||| ||||| || || || |||||||| ||||| Sbjct 1809502 TCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 >seq14 Length=2855554 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAG 134556 ||| | ||| | || || || ||||||||||| |||||||| || || || | | || Sbjct 999559 TCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTGCC 999500 Query 134557 AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTT 134616 | || ||||| || |||||||| || ||||| | ||| || || || || ||||| || | Sbjct 999499 A-TCTTCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCT 999441 Query 134617 TTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAA 134676 | |||||||| ||| || || || | || ||||| ||||| || | ||| | Sbjct 999440 TGTCTTGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGA 999381 Query 134677 TGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || || ||||| || ||||| ||||| Sbjct 999380 TTGTCTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGTCGTC 134563 |||||||| || || || || || ||||||||||| | |||||| || | || || Sbjct 999780 ACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAA-AGTTCGCCCATCCTC 999722 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 || ||||| || ||||| ||||| | ||| ||||| || || || || || || ||||| Sbjct 999721 CAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTG 999662 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| ||| || || ||| | |||||| || ||| || || | || || || || Sbjct 999661 AATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCTT 999602 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || || || || ||||| Sbjct 999601 CCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505391754011040