Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq52 104 3e-17
seq5 98.7 1e-15
seq11 95.1 2e-14
>seq52
Length=1204374
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | |||| ||||| | ||| | || | |||||| || | ||| ||
Sbjct 502995 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCC 503054
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
|||||| | || ||||||||| || ||||| || | || |||||||| |||||
Sbjct 503055 ATTAGAGGTTCCGTTTGTTCCACGGATGTAACTGCCCATAGCACGAATATTGTGGATAGA 503114
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || || || || ||| ||| | |||||| || || || ||||||||
Sbjct 503115 AACACCAATGCCACCAGCTGATTTGCTGATAACAGCACACTCCTTTAAGGTATCATATAT 503174
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||| ||||| ||||| ||| ||||| | ||| ||||| ||
Sbjct 503175 ACCTTCTATACTATCGTCTTTCATGCATACAAGGAAACAACT 503216
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||| | || || | || |||||||| ||||| ||||| || ||| | | |
Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACATAGTGTGG 503410
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
||||||| ||||| ||||| ||||| || ||||| || | || || | ||| | |
Sbjct 503411 TATGTTTTGATAGCAGATTCAATATCATCCTTGTGAATACCAACAGCAACCCTCATAAGC 503470
Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170
|| |||||||| | || || || | | ||||| |||||||| ||||||||
Sbjct 503471 ATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCAGA 503530
Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || |||||||||| ||| |||||| | || || |||||
Sbjct 503531 GTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577
>seq5
Length=5307744
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | |||| ||||| | ||| | || | |||||| || | ||| ||
Sbjct 4279355 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATGGGCACAATTCC 4279414
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
|||||| | |||||||||||| ||| ||||| || | || ||||| || || ||
Sbjct 4279415 ATTAGAGGTCCCATTTGTTCCACGAATGTAACTGCCCATGGCACGAATGTTGTGGATGGA 4279474
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || || || || ||| || | |||||| || || || ||||||||
Sbjct 4279475 AACACCAATACCACCAGCTGATTTGCTAATAACAGCACACTCCTTTAAGGTATCATATAT 4279534
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
|| ||||| || |||||| |||| | ||| ||||||||
Sbjct 4279535 CCCTTCTATACTGTCATCTTTCATACATACAAGGAAACAGCT 4279576
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||| | || || | || |||||||| ||||| ||||| || ||| | | |
Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACATAGTGTGG 4279775
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
||||||| ||||| ||||| ||||| || ||||| || | || || | ||| | |
Sbjct 4279776 TATGTTTTGATAGCAGATTCAATATCATCCTTGTGAATACCAACAGCAACCCTCATTAGC 4279835
Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170
|| || ||||||| || || ||| | | ||||| |||||||| ||||||||
Sbjct 4279836 ATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCAGA 4279895
Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || |||||||||| || |||||||| || || || ||
Sbjct 4279896 GTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942
>seq11
Length=3405507
Score = 95.1 bits (104), Expect = 2e-14
Identities = 86/107 (80%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||| || |||||||| || |||||||||||||| ||||| ||| || || || || ||
Sbjct 2720239 GCAAGCAAAGTCACAGTGAAGGCCCTCATCTCTGGAAATTAGTTCATTTGAGAAGGTTAG 2720180
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722
||| ||||| | || |||||||| |||||||||||||| ||| |||
Sbjct 2720179 TCCCGGCATCAATCCCCGCTTTTTCAGCCAAAATATGGC-GCAGAAG 2720134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686899767149280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |