Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq52 104 3e-17 seq5 98.7 1e-15 seq11 95.1 2e-14 >seq52 Length=1204374 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | |||| ||||| | ||| | || | |||||| || | ||| || Sbjct 502995 TCCTCCTTGGTCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCC 503054 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | || ||||||||| || ||||| || | || |||||||| ||||| Sbjct 503055 ATTAGAGGTTCCGTTTGTTCCACGGATGTAACTGCCCATAGCACGAATATTGTGGATAGA 503114 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| ||| | |||||| || || || |||||||| Sbjct 503115 AACACCAATGCCACCAGCTGATTTGCTGATAACAGCACACTCCTTTAAGGTATCATATAT 503174 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||| ||||| ||||| ||| ||||| | ||| ||||| || Sbjct 503175 ACCTTCTATACTATCGTCTTTCATGCATACAAGGAAACAACT 503216 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | || || | || |||||||| ||||| ||||| || ||| | | | Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACATAGTGTGG 503410 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||||| ||||| ||||| || ||||| || | || || | ||| | | Sbjct 503411 TATGTTTTGATAGCAGATTCAATATCATCCTTGTGAATACCAACAGCAACCCTCATAAGC 503470 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | || || || | | ||||| |||||||| |||||||| Sbjct 503471 ATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCAGA 503530 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || |||||||||| ||| |||||| | || || ||||| Sbjct 503531 GTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577 >seq5 Length=5307744 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | |||| ||||| | ||| | || | |||||| || | ||| || Sbjct 4279355 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATGGGCACAATTCC 4279414 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||||||| ||| ||||| || | || ||||| || || || Sbjct 4279415 ATTAGAGGTCCCATTTGTTCCACGAATGTAACTGCCCATGGCACGAATGTTGTGGATGGA 4279474 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| || || || |||||||| Sbjct 4279475 AACACCAATACCACCAGCTGATTTGCTAATAACAGCACACTCCTTTAAGGTATCATATAT 4279534 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || ||||| || |||||| |||| | ||| |||||||| Sbjct 4279535 CCCTTCTATACTGTCATCTTTCATACATACAAGGAAACAGCT 4279576 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | || || | || |||||||| ||||| ||||| || ||| | | | Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACATAGTGTGG 4279775 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||||| ||||| ||||| || ||||| || | || || | ||| | | Sbjct 4279776 TATGTTTTGATAGCAGATTCAATATCATCCTTGTGAATACCAACAGCAACCCTCATTAGC 4279835 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||||| || || ||| | | ||||| |||||||| |||||||| Sbjct 4279836 ATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCAGA 4279895 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || |||||||||| || |||||||| || || || || Sbjct 4279896 GTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942 >seq11 Length=3405507 Score = 95.1 bits (104), Expect = 2e-14 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||||||| || |||||||||||||| ||||| ||| || || || || || Sbjct 2720239 GCAAGCAAAGTCACAGTGAAGGCCCTCATCTCTGGAAATTAGTTCATTTGAGAAGGTTAG 2720180 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722 ||| ||||| | || |||||||| |||||||||||||| ||| ||| Sbjct 2720179 TCCCGGCATCAATCCCCGCTTTTTCAGCCAAAATATGGC-GCAGAAG 2720134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686899767149280