Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 170 2e-37 >seq6 Length=5093711 Score = 170 bits (188), Expect = 2e-37 Identities = 391/581 (67%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||| | |||| | | |||||| |||||||||| ||||| ||| || || | Sbjct 4851660 TGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAAAGCCATGGCCTCGTTCT 4851719 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGCATTAAAACCA 43825 |||| || || || || || | | | ||| | |||||| | || | | || Sbjct 4851720 GGACCGCTGAGGAGGTCGACCTCTCACAGGACCTCCGCCATTGGGAAGGCCTCACGGCCG 4851779 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | ||||| ||||| || || ||| |||| || || || || ||| || || || Sbjct 4851780 -ACGAAAAGCATTTCATCTCCCACGTTCTGGCCTTCTTCGCCGCCTCCGATGGTATCGTT 4851838 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || ||| | | | ||||| | | || ||||| | | || || || || Sbjct 4851839 CTGGAGAATCTCGCCGGCCGGTTCATGAAGGAGGTTCAGGTTGCGGAGGCTAGAGCGTTC 4851898 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 ||||| || ||||| || || || || ||||| || || ||||||||| | || | || Sbjct 4851899 TATGGCTTCCAAATCGCAATTGAGAACATTCACTCCGAGATGTACAGTTTGTTGCTCGAA 4851958 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 || |||||||| || ||||||| | | ||||| | || || || || |||||| Sbjct 4851959 ACCTACATCAAGGACTCAGTCGAGAAGAACAGGTTGTTCCACGCCATCGAGACTGTACCT 4852018 Query 44066 -GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 ||| | | ||||| || ||||| || |||||||| | || || |||| Sbjct 4852019 TGCGTCGCGA-AGAAAGCCGAGTGGGCGCTAAAATGGATCGACGGCTCCGAGTCGTTTGC 4852077 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGG 44183 ||| || || | | || ||| ||||||||| |||||||| || ||| || |||| Sbjct 4852078 AGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTTTCTTCTCGGGAAGTTTCTGCG- 4852136 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 ||||||| ||| | ||||||||||| | ||||| || ||||| || ||||| || || | Sbjct 4852137 CCATATTCTGGCTGAAGAAACGAGGCCTTATGCCAGGATTGACATTCTCAAACGAATTGA 4852196 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || || |||||| | || |||||||| || |||||| Sbjct 4852197 TCTCCCGAGACGAAGGCCTGCACTGCGATTTCGCGTGCTTG 4852237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450904117260