Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq124 120 3e-22 seq14 98.7 8e-16 seq4 93.3 4e-14 >seq124 Length=632428 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| || || || || || |||||||||||||| || |||| | |||||| Sbjct 447485 ACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCTTCG 447544 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| ||| |||| || | ||| || ||||| || | |||||||||||| | Sbjct 447545 AGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCTTGG 447604 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | || | || || | | ||| || || | || || | ||| Sbjct 447605 ATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATGGTTTTT 447664 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||| ||||||||||| Sbjct 447665 CCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| || || | ||||| || | ||| || |||||||| || ||||| ||| | Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||||||||| || || ||| | || || | ||| || ||||| || Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || || ||| || | | || | ||| || | |||||| Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||| || |||||||||||||| || ||||| Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27034 GCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGT 27093 ||| ||||||||| | || || |||||||||||||| |||||| || | | ||| Sbjct 447024 GCAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGT 447083 Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153 |||| || || || || ||| |||| || | ||| || || || || | |||||||||| Sbjct 447084 CTTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTAT 447143 Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | || || |||| | | || | || || | ||||| || ||||| || | Sbjct 447144 CTTGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTG 447203 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| | || |||||||| || ||||| Sbjct 447204 TTTTTCCCGTTAAGGTCTTCACAAAAATCTGCAT 447237 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||||||| || || || ||||||||||| || |||||| || | | || Sbjct 354474 CGCAGTACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCG 354415 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 | ||| || || || || ||| |||| | | ||| || || || || | |||||||| Sbjct 354414 TGTTCCAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTT 354355 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT-CAACTTCTAGAGTTAT 27211 || ||||||| |||| | || | || || | | || || | || | || || Sbjct 354354 TC-TTGATCTTGGCYTTCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGAT 354296 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || || |||||||| ||||||||||| Sbjct 354295 GGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260 >seq14 Length=2855554 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | ||| | |||||||| || ||||| ||||| || ||||||||||| Sbjct 998886 CCCCCACGAAGCCGAAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCA 998827 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| || ||||| ||||| || |||| || | ||||||||| || || Sbjct 998826 AGAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGG 998767 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| ||| || |||| | || | || || | ||| || Sbjct 998766 ATACCCTCCTTATCTTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACC 998707 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||| || || || |||||||| |||||||| Sbjct 998706 TCAAGCGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 998660 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | ||||| || || || |||||||| ||| | | | || | || ||| Sbjct 998640 ACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGACCATCCTCG 998581 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || ||||| ||| | || || | || || || || || | ||||||||||| | Sbjct 998580 AGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGG 998521 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | || || | ||| || || || || || | |||| Sbjct 998520 ATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTGATTGTTTTG 998461 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAA 27256 || || ||||||||||| ||||||||||| ||||||| Sbjct 998460 CCAGTGAGAGTTTTCACGAAGATTTGCAT--CTGCTAA 998425 >seq4 Length=5448771 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||| ||| | | | || |||| || ||||| ||||| Sbjct 199576 CGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACC 199635 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | ||||||||||| || |||||||| | ||||| || || ||||| || Sbjct 199636 AGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCTT 199695 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | || || | | ||||| || |||||||| | || ||||||| || Sbjct 199696 CACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGT 199755 Query 27230 TTTCACAAAGATTTGCATA 27248 |||||||||||| |||||| Sbjct 199756 TTTCACAAAGATCTGCATA 199774 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGT 27104 |||| || || ||||| || || ||||||||| | | || | || || ||||| Sbjct 205246 TGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCCAGCTGC 205305 Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || ||||||||||||| || |||||||| | ||||| || || |||||| Sbjct 205306 TTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTG 205365 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| | || | || || | || || || |||||||| | || || ||| Sbjct 205366 GCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCTGTC 205425 Query 27225 AGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| ||||| |||||| Sbjct 205426 AGCGTTTTCACGAAGATCTGCATA 205449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424928951809824