Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq124 120 3e-22
seq14 98.7 8e-16
seq4 93.3 4e-14
>seq124
Length=632428
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| || || || || || |||||||||||||| || |||| | ||||||
Sbjct 447485 ACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCTTCG 447544
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| |||||||| ||| |||| || | ||| || ||||| || | |||||||||||| |
Sbjct 447545 AGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCTTGG 447604
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| |||| | || | || || | | ||| || || | || || | |||
Sbjct 447605 ATCTTGGCCTTCACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATGGTTTTT 447664
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || |||||||| |||||||||||
Sbjct 447665 CCAGTGAGGGTTTTCACGAAGATTTGCAT 447693
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| || || | ||||| || | ||| || |||||||| || ||||| ||| |
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | || ||||||||||||| || || ||| | || || | ||| || ||||| ||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || || || || ||| || | | || | ||| || | ||||||
Sbjct 447815 ATTCCTTCCTTGTCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 447874
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | |||||| || |||||||||||||| || |||||
Sbjct 447875 TCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 27034 GCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGT 27093
||| ||||||||| | || || |||||||||||||| |||||| || | | |||
Sbjct 447024 GCAGTACCAAATGCGAAGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGT 447083
Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153
|||| || || || || ||| |||| || | ||| || || || || | ||||||||||
Sbjct 447084 CTTCCAGTTGCTTTCCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTAT 447143
Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213
| || || |||| | | || | || || | ||||| || ||||| || |
Sbjct 447144 CTTGAATTTTAGCCTTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTG 447203
Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| ||||| | || |||||||| || |||||
Sbjct 447204 TTTTTCCCGTTAAGGTCTTCACAAAAATCTGCAT 447237
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||||||| || || || ||||||||||| || |||||| || | | ||
Sbjct 354474 CGCAGTACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCG 354415
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
| ||| || || || || ||| |||| | | ||| || || || || | ||||||||
Sbjct 354414 TGTTCCAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTT 354355
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT-CAACTTCTAGAGTTAT 27211
|| ||||||| |||| | || | || || | | || || | || | || ||
Sbjct 354354 TC-TTGATCTTGGCYTTCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGAT 354296
Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| ||| || || || |||||||| |||||||||||
Sbjct 354295 GGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260
>seq14
Length=2855554
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || || | ||| | |||||||| || ||||| ||||| || |||||||||||
Sbjct 998886 CCCCCACGAAGCCGAAGCACCAAATGCAAAGTAGATTCTTTCTGGATATTGTAGTCAGCA 998827
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || |||| || ||||| ||||| || |||| || | ||||||||| || ||
Sbjct 998826 AGAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGAGGG 998767
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| |||||| ||||| ||| || |||| | || | || || | ||| ||
Sbjct 998766 ATACCCTCCTTATCTTGGATTTTAGCCTTCACATTGTCAATCGTATCAGAACTTTCCACC 998707
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | |||||| || || || |||||||| ||||||||
Sbjct 998706 TCAAGCGTGATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 998660
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/218 (69%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||| ||| | ||||| || || || |||||||| ||| | | | || | || |||
Sbjct 998640 ACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGACCATCCTCG 998581
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| || ||||| ||| | || || | || || || || || | ||||||||||| |
Sbjct 998580 AGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCTTTATCTTGG 998521
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| || | | || | || || | ||| || || || || || | ||||
Sbjct 998520 ATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTGATTGTTTTG 998461
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAA 27256
|| || ||||||||||| ||||||||||| |||||||
Sbjct 998460 CCAGTGAGAGTTTTCACGAAGATTTGCAT--CTGCTAA 998425
>seq4
Length=5448771
Score = 93.3 bits (102), Expect = 4e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
||| || || || || || ||||| ||| | | | || |||| || ||||| |||||
Sbjct 199576 CGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTACC 199635
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|| | ||||||||||| || |||||||| | ||||| || || ||||| ||
Sbjct 199636 AGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCTT 199695
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
|| | || | || || | | ||||| || |||||||| | || ||||||| ||
Sbjct 199696 CACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTCTTCCCCGTCAACGT 199755
Query 27230 TTTCACAAAGATTTGCATA 27248
|||||||||||| ||||||
Sbjct 199756 TTTCACAAAGATCTGCATA 199774
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGT 27104
|||| || || ||||| || || ||||||||| | | || | || || |||||
Sbjct 205246 TGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGACCATCCTCCAGCTGC 205305
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || ||||||||||||| || |||||||| | ||||| || || ||||||
Sbjct 205306 TTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTG 205365
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| | || | || || | || || || |||||||| | || || |||
Sbjct 205366 GCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCTGTC 205425
Query 27225 AGAGTTTTCACAAAGATTTGCATA 27248
|| |||||||| ||||| ||||||
Sbjct 205426 AGCGTTTTCACGAAGATCTGCATA 205449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424928951809824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |