Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 seq49 120 4e-22 seq60 107 2e-18 seq11 93.3 5e-14 seq5 84.2 3e-11 >seq1 Length=7185522 Score = 127 bits (140), Expect = 3e-24 Identities = 220/317 (69%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||||||||||||||| || | | ||||| || ||||| |||||||| ||||| | Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | || | ||||| |||||||||||||||||||||||||| || Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGTCTTCCCACAGCATCAATCTCATCAATGAAGACAATGCA 6703702 Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || | ||| | ||| | || || | || | || || ||||||||||| | Sbjct 6703701 AGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACACCCA 6703643 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| || ||||| | || ||||| ||| || |||||| ||| | || || | Sbjct 6703642 CAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTCCGG 6703583 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | | ||| ||||| || || |||||||| ||||| || || |||| ||| ||| Sbjct 6703582 CCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACCCTT 6703523 Query 11838 GGGGGATCTTGGCACCA 11854 ||||| ||||| ||| Sbjct 6703522 TTGGGATTTTGGCTCCA 6703506 >seq49 Length=1248075 Score = 120 bits (132), Expect = 4e-22 Identities = 281/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | || ||||| ||||| || | ||||||||| | ||||| Sbjct 901121 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCTCAAAC 901180 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || || | || |||||||| |||||||| | | Sbjct 901181 CCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC---A 901237 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| || | ||| || || |||||||| ||||||| || ||||| || Sbjct 901238 CCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAA 901297 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || |||||| ||| | | |||||||| ||||| | ||||| | ||| ||| Sbjct 901298 GGAGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACCGACA 901357 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCG 11777 |||||||| ||||| | | | || | || || ||||||||| || |||||| | Sbjct 901358 AACATCTCAACAAACTCGGAACCTGA--AATGGAGAAAAATGGGACACCTGCTTCACCTG 901415 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | ||||| ||| || || ||||| || || ||||| ||| ||||||| | ||| Sbjct 901416 CAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCTT 901475 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 ||| || || ||| || | ||||| || | ||| ||||| ||||| | || Sbjct 901476 TGGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAAACTCCACCACCT 901535 Query 11898 C 11898 | Sbjct 901536 C 901536 >seq60 Length=1131370 Score = 107 bits (118), Expect = 2e-18 Identities = 197/285 (69%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | ||| || || ||||| | | || ||||| ||| Sbjct 1083005 TCAAAACGTCCGGGTCTTAGTAAGGCAGAGTCGAGAATATCTGCCCTGTTGGTGGCAGCA 1083064 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 || || | || || || | | || || |||||||| ||||| | | ||| || | | Sbjct 1083065 ATTACAATGATACCGGTATTACCCTCGAAACCATCCATTTCGGTTAAAAGTTGGTTGAGT 1083124 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC-AC 11628 || |||||||| |||||||| || |||| ||||| | | ||| | |||| || Sbjct 1083125 GTCTGTTCTCTTTCATCATTCCCTCC---ACCAATCCCAGCTCCTCTTTG-TCGCCCGAC 1083180 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||||||| ||||||| || ||||| || || ||| || ||| | | || || Sbjct 1083181 CGCATCAATTTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAATAG 1083240 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 |||||||| | ||||| ||||||||||||||||| ||||| Sbjct 1083241 GTCGCGAACTCGAGATGCACCAACACCAACAAACATCTCAACAAA 1083285 >seq11 Length=3405507 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || |||||||||| |||||| ||||||||||||||| ||| || Sbjct 2720235 GCAAAGTCACAGTGAAGGCCCTCATCTCTGGAAATTAGTTCATTTGAGAAGGTTAGTCCC 2720176 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 122759 ||||| | |||||||| |||| |||| | || |||||||| Sbjct 2720175 GGCATCAATCCCCGCTTTTTCAGCCAAAATATGGCGCAGAA 2720135 >seq5 Length=5307744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCG 111110 |||||| ||||||||||| || | ||||||||||||||||| | ||| || |||| | | Sbjct 4277992 ATCCGCAAGACCTTGAACCCCAATACCAATAGGTCTGTGTCTTAGATTTGATCTTTTG-G 4278050 Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 111165 |||||||||| ||||| |||| ||||| | ||| |||||| | ||||| Sbjct 4278051 CAGTCTCAACAGGATAGTAATTGACATCAATTATCTTGTTCAGATTTGTTGTAAC 4278105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023741379200