Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 3e-24
seq49 120 4e-22
seq60 107 2e-18
seq11 93.3 5e-14
seq5 84.2 3e-11
>seq1
Length=7185522
Score = 127 bits (140), Expect = 3e-24
Identities = 220/317 (69%), Gaps = 2/317 (1%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||||||||||||||| || | | ||||| || ||||| |||||||| ||||| |
Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762
Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658
| |||||| | | || | ||||| |||||||||||||||||||||||||| ||
Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGTCTTCCCACAGCATCAATCTCATCAATGAAGACAATGCA 6703702
Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717
|| | ||| | ||| | || || | || | || || ||||||||||| |
Sbjct 6703701 AGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACACCCA 6703643
Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777
|||||| || ||||| | || ||||| ||| || |||||| ||| | || || |
Sbjct 6703642 CAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTCCGG 6703583
Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837
| | ||| ||||| || || |||||||| ||||| || || |||| ||| |||
Sbjct 6703582 CCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACCCTT 6703523
Query 11838 GGGGGATCTTGGCACCA 11854
||||| ||||| |||
Sbjct 6703522 TTGGGATTTTGGCTCCA 6703506
>seq49
Length=1248075
Score = 120 bits (132), Expect = 4e-22
Identities = 281/421 (67%), Gaps = 10/421 (2%)
Strand=Plus/Plus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
||||| || || | | || ||||| ||||| || | ||||||||| | |||||
Sbjct 901121 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCTCAAAC 901180
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
|||||||| || || || | || || | || |||||||| |||||||| | |
Sbjct 901181 CCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC---A 901237
Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659
||| |||| || | ||| || || |||||||| ||||||| || ||||| ||
Sbjct 901238 CCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAA 901297
Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719
|| |||||| ||| | | |||||||| ||||| | ||||| | ||| |||
Sbjct 901298 GGAGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACCGACA 901357
Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCG 11777
|||||||| ||||| | | | || | || || ||||||||| || |||||| |
Sbjct 901358 AACATCTCAACAAACTCGGAACCTGA--AATGGAGAAAAATGGGACACCTGCTTCACCTG 901415
Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837
| ||||| ||| || || ||||| || || ||||| ||| ||||||| | |||
Sbjct 901416 CAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCTT 901475
Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897
||| || || ||| || | ||||| || | ||| ||||| ||||| | ||
Sbjct 901476 TGGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAAACTCCACCACCT 901535
Query 11898 C 11898
|
Sbjct 901536 C 901536
>seq60
Length=1131370
Score = 107 bits (118), Expect = 2e-18
Identities = 197/285 (69%), Gaps = 8/285 (3%)
Strand=Plus/Plus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
|||||||| || || | || | ||| || || ||||| | | || ||||| |||
Sbjct 1083005 TCAAAACGTCCGGGTCTTAGTAAGGCAGAGTCGAGAATATCTGCCCTGTTGGTGGCAGCA 1083064
Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572
|| || | || || || | | || || |||||||| ||||| | | ||| || | |
Sbjct 1083065 ATTACAATGATACCGGTATTACCCTCGAAACCATCCATTTCGGTTAAAAGTTGGTTGAGT 1083124
Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC-AC 11628
|| |||||||| |||||||| || |||| ||||| | | ||| | |||| ||
Sbjct 1083125 GTCTGTTCTCTTTCATCATTCCCTCC---ACCAATCCCAGCTCCTCTTTG-TCGCCCGAC 1083180
Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688
||||||||| ||||||| || ||||| || || ||| || ||| | | || ||
Sbjct 1083181 CGCATCAATTTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAATAG 1083240
Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733
|||||||| | ||||| ||||||||||||||||| |||||
Sbjct 1083241 GTCGCGAACTCGAGATGCACCAACACCAACAAACATCTCAACAAA 1083285
>seq11
Length=3405507
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| || |||||||||| |||||| ||||||||||||||| ||| ||
Sbjct 2720235 GCAAAGTCACAGTGAAGGCCCTCATCTCTGGAAATTAGTTCATTTGAGAAGGTTAGTCCC 2720176
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 122759
||||| | |||||||| |||| |||| | || ||||||||
Sbjct 2720175 GGCATCAATCCCCGCTTTTTCAGCCAAAATATGGCGCAGAA 2720135
>seq5
Length=5307744
Score = 84.2 bits (92), Expect = 3e-11
Identities = 89/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCG 111110
|||||| ||||||||||| || | ||||||||||||||||| | ||| || |||| | |
Sbjct 4277992 ATCCGCAAGACCTTGAACCCCAATACCAATAGGTCTGTGTCTTAGATTTGATCTTTTG-G 4278050
Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 111165
|||||||||| ||||| |||| ||||| | ||| |||||| | |||||
Sbjct 4278051 CAGTCTCAACAGGATAGTAATTGACATCAATTATCTTGTTCAGATTTGTTGTAAC 4278105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628023741379200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |