Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq49 96.9 4e-15 >seq1 Length=7185522 Score = 114 bits (126), Expect = 2e-20 Identities = 258/382 (68%), Gaps = 8/382 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-- 14209 |||||||||||||||||||||||| |||||||| ||||| || | || |||||| || Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762 Query 14210 -GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | |||| || | || || ||| || || || ||||| ||||| ||||| || || Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGT--CTT-CCCACAGCATCAATCTCATCAATGAAGACAAT 6703705 Query 14269 ACATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || || | ||| || ||| || || | || | ||||||| ||||| |||| Sbjct 6703704 GCAAGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACAC 6703646 Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387 ||||||||| || ||||| | | ||| | ||| || ||| || || || || | Sbjct 6703645 CCACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTC 6703586 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCAC 14447 | || | ||| ||||| || || ||||| || || || || || |||| ||| | Sbjct 6703585 CGGCCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACC 6703526 Query 14448 CACGTGGGATCCTGGCACCACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507 | |||||| |||| ||| || ||| ||||| | ||| | ||| || || | Sbjct 6703525 CTTTTGGGATTTTGGCTCCAAGAGCAGTGTACTTATCAGGGTTTTTCAAGAAATCGACCA 6703466 Query 14508 TTTCTTCCAATTCATCCTTCGC 14529 ||| | || |||| |||||| Sbjct 6703465 CTTCCTGCAGTTCAAGCTTCGC 6703444 >seq49 Length=1248075 Score = 96.9 bits (106), Expect = 4e-15 Identities = 241/360 (67%), Gaps = 12/360 (3%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| || || | ||| || || || || |||| ||||| || | ||||| Sbjct 901120 GTCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCTCAAA 901179 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| ||||| | || || |||| ||| ||||| | |||||||||| || Sbjct 901180 CCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC--- 901236 Query 14215 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 |||| || | || | ||| || || || ||||||||||| | || || || || Sbjct 901237 ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCA 901296 Query 14272 TGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || |||||| ||| |||| |||| ||| || || | ||||| | ||| Sbjct 901297 AGGAGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACCG 901354 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACC 14388 ||||||||||| ||||| | || | ||| || | || || ||||| | |||||| Sbjct 901355 ACAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCACC 901413 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 || ||||| ||| || || |||||||| || ||||| || ||||||| |||| Sbjct 901414 TGCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 901473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427067577120