Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1 114 2e-20
seq49 96.9 4e-15
>seq1
Length=7185522
Score = 114 bits (126), Expect = 2e-20
Identities = 258/382 (68%), Gaps = 8/382 (2%)
Strand=Plus/Minus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-- 14209
|||||||||||||||||||||||| |||||||| ||||| || | || |||||| ||
Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762
Query 14210 -GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268
| |||| || | || || ||| || || || ||||| ||||| ||||| || ||
Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGT--CTT-CCCACAGCATCAATCTCATCAATGAAGACAAT 6703705
Query 14269 ACATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327
|| || | ||| || ||| || || | || | ||||||| ||||| ||||
Sbjct 6703704 GCAAGG-GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACAC 6703646
Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387
||||||||| || ||||| | | ||| | ||| || ||| || || || || |
Sbjct 6703645 CCACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTC 6703586
Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCAC 14447
| || | ||| ||||| || || ||||| || || || || || |||| ||| |
Sbjct 6703585 CGGCCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACC 6703526
Query 14448 CACGTGGGATCCTGGCACCACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507
| |||||| |||| ||| || ||| ||||| | ||| | ||| || || |
Sbjct 6703525 CTTTTGGGATTTTGGCTCCAAGAGCAGTGTACTTATCAGGGTTTTTCAAGAAATCGACCA 6703466
Query 14508 TTTCTTCCAATTCATCCTTCGC 14529
||| | || |||| ||||||
Sbjct 6703465 CTTCCTGCAGTTCAAGCTTCGC 6703444
>seq49
Length=1248075
Score = 96.9 bits (106), Expect = 4e-15
Identities = 241/360 (67%), Gaps = 12/360 (3%)
Strand=Plus/Plus
Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154
|||||| || || | ||| || || || || |||| ||||| || | |||||
Sbjct 901120 GTCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCTCAAA 901179
Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214
|||||||| ||||| | || || |||| ||| ||||| | |||||||||| ||
Sbjct 901180 CCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC--- 901236
Query 14215 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271
|||| || | || | ||| || || || ||||||||||| | || || || ||
Sbjct 901237 ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCA 901296
Query 14272 TGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329
|| |||||| ||| |||| |||| ||| || || | ||||| | |||
Sbjct 901297 AGGAGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACCG 901354
Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACC 14388
||||||||||| ||||| | || | ||| || | || || ||||| | ||||||
Sbjct 901355 ACAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCACC 901413
Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448
|| ||||| ||| || || |||||||| || ||||| || ||||||| ||||
Sbjct 901414 TGCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 901473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618427067577120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |