Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq49 129 7e-25 seq1 129 7e-25 seq60 107 2e-18 >seq49 Length=1248075 Score = 129 bits (142), Expect = 7e-25 Identities = 284/418 (68%), Gaps = 16/418 (4%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| || || | | || || || || || |||| ||| || |||||| | ||| Sbjct 901121 TCAAGAATGTCTGCCCTGTTTGTGGCAGCAATTACAATAATGCCAGTGTTTCCCT--CAA 901178 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 | |||||||| || || | ||| ||||| | || ||||| | |||||||||| | Sbjct 901179 ACCCATCCATTTCAGTTAGAAGCTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCACC-- 901236 Query 9675 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 |||| |||| || | ||| ||| || |||||||| ||||||| || || |||| Sbjct 901237 -ACCAATTCCAGTACCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGC 901295 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | || |||||| || |||| |||||||| || ||||| || || | ||| Sbjct 901296 AAGGAGCATTTTCCTTGGC--CTTCTTGAAGAGATCACGAACACGAGAAGCACCAATACC 901353 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 ||||||||||| ||||| | | | ||| || | || || |||||| | ||||| Sbjct 901354 GACAAACATCTCAACAAACTCGGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCAC 901412 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | |||||||| ||| || |||||||| || || ||||| ||| |||| || ||| Sbjct 901413 CTGCAATGGCCTTGGCTAGCAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACAC 901472 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 || ||||| || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 901473 CTTTGGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAAACTCCAC 901530 >seq1 Length=7185522 Score = 129 bits (142), Expect = 7e-25 Identities = 253/372 (68%), Gaps = 4/372 (1%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || || || ||||| || | || |||||| | Sbjct 6703821 AAAGCCATCCATCTCAGTCAAGAGCTGATTGATCGTTTGCTCTCTCTCGTCATTCCCACC 6703762 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | |||||| | | || ||||||| ||||||||||||||||||||||| ||||| Sbjct 6703761 TCCAAGACCAGCCCCTCTCTGTCTTCCCACAGCATCAATCTCATCAATGAAGACAATGCA 6703702 Query 9733 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || | ||| | | || || || | |||| || | | || |||||||| Sbjct 6703701 AGG--GGCTTTGGACTTGGCCTTCTCGAACAAGTCCCTCACTCTCGAAGCACCCACACCC 6703644 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||||| || ||||| | || ||| | ||| || ||| || ||| || || || Sbjct 6703643 ACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCCTCTCCG 6703584 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 || | ||| ||||| ||||||||||| || ||||| || || |||||||| ||| Sbjct 6703583 GCCACGGCCCGGGCCAGAAGAGTCTTTCCGGTACCAGGAGGTCCAACGAGGAGGCACCCT 6703524 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970 ||| || ||||| ||| || ||| | ||||| | || | ||||| || | | Sbjct 6703523 TTTGGGATTTTGGCTCCAAGAGCAGTGTACTTATCAGGGTTTTTCAAGAAATCGACCACT 6703464 Query 9971 TCTTCCAATTCA 9982 || | || |||| Sbjct 6703463 TCCTGCAGTTCA 6703452 >seq60 Length=1131370 Score = 107 bits (118), Expect = 2e-18 Identities = 277/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 || || ||||| | | || || || || || |||| ||||| || | | || ||| Sbjct 1083035 TCGAGAATATCTGCCCTGTTGGTGGCAGCAATTACAATGATACCGGTATTACCCTCGAAA 1083094 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| || || ||||||||||| | || ||||| | |||||||||| || | Sbjct 1083095 CCATCCATTTCGGTTAAAAGTTGGTTGAGTGTCTGTTCTCTTTCATCATTCCCT---CCA 1083151 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| ||||| | | ||| || || |||||||| ||||||| || || ||||| Sbjct 1083152 CCAATCCCAGCTCCTCTTTGTCGCCCGACCGCATCAATTTCATCAACAAACACAATGCAA 1083211 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || ||| || || |||| || || || || || || || || ||||||| Sbjct 1083212 GGAGCATTCTCTTTGGC--CTTCTTGAATAGGTCGCGAACTCGAGATGCACCAACACCAA 1083269 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | || | || || || ||| || |||||| Sbjct 1083270 CAAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCAGCTTCACCA 1083328 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| ||| || || ||||||||||| || || || ||| || || ||||| Sbjct 1083329 GCAATTGCTTTTGCCAGCAGAGTCTTACCAGTTCCAGGAGGACCAATAAGAAGAACACCT 1083388 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||| || ||| | || | |||||||| | ||| | ||| || || Sbjct 1083389 TTAGGAATCCGAGCTCCAACTGCAGTAAACCTCTCAGGCTTCTTCAAAAACTCTAC 1083444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253130120480