Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 152 6e-32 >seq6 Length=5093711 Score = 152 bits (168), Expect = 6e-32 Identities = 363/534 (68%), Gaps = 16/534 (3%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| || | || |||||| ||| |||||| | |||||| | |||| Sbjct 4851693 TGTACAAGAAAGCCATGGCCTCGTTCTGGACCGCTGAGGAGGTCGACCTCTCACAGGACC 4851752 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | ||||||| |||| |||||| ||||||||||| || ||||||| Sbjct 4851753 TCCGCCATTGGGAAGGCCTCACGGCCGACGAAAAGCATTTCATCTCCCACGTTCTGGCCT 4851812 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTC--CAAGGA 59770 ||||||| || ||||| || || |||| ||| | | | | | ||| ||||| Sbjct 4851813 TCTTCGCCGCCTCCGATGGTATCGTTCTGGAGAATCTCGCC--GGCCGGTTCATGAAGGA 4851870 Query 59771 TGTCCAGATTGCCGAGGCCCGGTCGTTCTA-CGCGTATCAGTCGTTCAA-CGAGTCTATC 59828 || ||| |||| ||||| | ||||||| || | | ||| ||| ||| || Sbjct 4851871 GGTTCAGGTTGCGGAGGCTAGAGCGTTCTATGGCTTCCAAATCG--CAATTGAGAACATT 4851928 Query 59829 CACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG-GC 59887 |||||||||| |||| | || |||| | | ||||||| | | |||||| | Sbjct 4851929 CACTCCGAGATGTACAGTTTGTTGCTCGAAACCTACATCAAGGACTCAGTCGAGAAGAAC 4851988 Query 59888 TGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 ||| |||||| ||||| ||||| || || || || | ||||| || ||||| Sbjct 4851989 AGGT-TGTTCCACGCCATCGAGACTGTACCTTGC-GTCGCGAAGAAAGCCGAGTGGGCGC 4852046 Query 59947 TGCAGTGGAT-GA-GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 | | ||||| || | | ||| || |||||| | ||||| || | || ||||| || Sbjct 4852047 TAAAATGGATCGACGGCTCCGAG--TCGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGT 4852104 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 |||||| || |||||||| || ||||| || || |||||||| || || || ||||| Sbjct 4852105 GGAAGGTATTTTCTTCTCGGGAAGTTTCTGCGCCATATTCTGGCTGAAGAAACGAGGCCT 4852164 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| || ||| ||||| ||||| |||| ||||| ||||| ||||| || Sbjct 4852165 TATGCCAGGATTGACATTCTCAAACGAATTGATCTCCCGAGACGAAGGCCTGCA 4852218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517586898880