Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 109 6e-19 seq69 86.0 7e-12 seq5 86.0 7e-12 seq1 82.4 8e-11 >seq6 Length=5093711 Score = 109 bits (120), Expect = 6e-19 Identities = 474/731 (65%), Gaps = 28/731 (4%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || |||| ||| || || |||||||| ||||| | || ||| || ||||| Sbjct 4852519 ATACTCTCCCACCCTCTTCTCGAAGAAGTTGGTTTTCCCCTGCAGCGATATCAATTCCAT 4852460 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGGCG 74581 ||| ||||| ||||||| | || |||||| | | ||| | | ||| | || Sbjct 4852459 CCAATCGAACGGGTTCTGTACATTGTAAATCTTGCTGTGCCCTAGGGCTACCAGCAACCG 4852400 Query 74582 ATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCA 74641 || || || || | ||||||| |||| | | | ||| || | | ||| Sbjct 4852399 GTCAGCAACGAACTCGATGTACTCGCTCATCAGATCGCCGTTCATCCCCACCAACGCGCA 4852340 Query 74642 CGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGTG 74701 ||||||||| ||| | || || ||||| | || ||| |||| ||| | Sbjct 4852339 CGGCAGTGCATCGCACACGAATTCCCTCTCGATATCCACCGCCTGCCGGACGATCCCCTT 4852280 Query 74702 AATGTCTTTG--GAAGGGCACTTT-TCCCTCAGGTGAGAGTAAAGCGT-CACGGCAAACT 74757 | ||||| | | || || | ||||| ||||||| ||| |||| ||| Sbjct 4852279 CA---CTTTGTCGTCGCTCAGTTGATTCCTCATCAGAGAGTACAGCAAGCACGCGAAATC 4852223 Query 74758 CCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAA 74817 | | ||| |||||| |||| | |||||||| || || || | | || ||||||| Sbjct 4852222 GCAG-TGCAGGCCTTCGTCTCGGGAGATCAATTCGTTTGAGAATGTCAATCCTGGCATAA 4852164 Query 74818 GTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGA 74877 | || || ||||||| ||| || ||||| ||||| || |||||| || ||||| | Sbjct 4852163 GGCCTCGTTTCTTCAGCCAGAATATGGCGCAGAAACTTCCCGAGAAGAAAATACCTTCCA 4852104 Query 74878 CACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGTCT 74934 |||| || ||| | | || || | || |||| ||||| ||| ||||| | Sbjct 4852103 CACATGCGAAGCCAATCAGACGCTCTGCAAACGAC---TCGGAGCCGTCGATCCATTTTA 4852047 Query 74935 GAGCCCATTCAGCTTT--TCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT 74992 | ||||| || ||||| ||| ||| ||| ||||| ||||| || ||||| | || Sbjct 4852046 GCGCCCACTCGGCTTTCTTCGC--GACGCAAGGTACAGTCTCGATGGCGTGGAACAACCT 4851989 Query 74993 TGCCTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 |||||| | | ||||||| | || || || | || | |||| |||| || | Sbjct 4851988 GTTCTTCTCGACTGAGTCCTTGATGTAGGTT-TCGAGCAACAAACTGTACATCTCGGAGT 4851930 Query 75052 GAATCGACTCG-TTGAACGACTGGTACGCG-TAGAAAGACCGCGCCTCTGCAATCTGTAC 75109 |||| ||| ||| ||| | | | || ||||| | | ||||| |||| ||| || Sbjct 4851929 GAATGTTCTCAATTG--CGATTTGGAAGCCATAGAACGCTCTAGCCTCCGCAACCTGAAC 4851872 Query 75110 ATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAA 75167 ||||| |||| | | ||| |||||||| ||||| || || ||||||||||| Sbjct 4851871 CTCCTTCATGAACCGGCC--GGCGAGATTCTCCAGAACGATACCATCGGAGGCGGCGAAG 4851814 Query 75168 AAAGCCAGTAC 75178 || ||||| || Sbjct 4851813 AAGGCCAGAAC 4851803 >seq69 Length=1087415 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1067078 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 1067019 Query 79683 TTGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 1067018 CTGAGCTACGAGAGCAA 1067002 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1075740 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 1075681 Query 79683 TTGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 1075680 CTGAGCTACGAGAGCAA 1075664 >seq5 Length=5307744 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 269806 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 269747 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 269746 TGAGCTACGAGAGC 269733 >seq1 Length=7185522 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3443102 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3443161 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 3443162 TGAGCTATGAAAGCA 3443176 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4894304 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4894363 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 4894364 TGAGCTACGAGAGCA 4894378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208804109600