Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq124 102 6e-17
>seq124
Length=632428
Score = 102 bits (112), Expect = 6e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || |||||||||||||| || || ||| ||||| |||| || ||||| |
Sbjct 447921 ATGCAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTTCT 447862
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || ||||| || || ||||| ||||| ||||| |||| ||| |
Sbjct 447861 GATACTATTGACAAT--GTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACC 447804
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || |||| || || ||||| || | || |||| || | | || |||||||||
Sbjct 447803 AGCAGAGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACA 447744
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| ||||||||| ||| | || ||||| | ||||| || || ||
Sbjct 447743 ACATACAAAAAGAGTCCACGCTCCACTTGGTGCTCCGTTTACGCGGTGG 447695
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/196 (71%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||||||||| || ||||| || || || || ||| ||| | || || |||||| |
Sbjct 447466 AATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTC 447407
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|||| || ||||| |||||| || || ||||| |||||| | || ||
Sbjct 447406 CGACACAATTGACAAT--GTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGAC 447349
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965
|||||| || ||||||| || || || || | || || | ||| | |||| |||||||
Sbjct 447348 CAGCAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTG-CCGATTA 447290
Query 27966 CAACATCCAAAAAGAG 27981
|||||| ||||| |||
Sbjct 447289 CAACATTCAAAAGGAG 447274
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATG-TCGAAAGCAC 27848
|||||||| || |||||||| || ||||| ||| || || | || | | |||||| |
Sbjct 354260 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTC 354319
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| | || ||||| || || || || || ||||| || | || ||
Sbjct 354320 TGATACCATCGACAAT--GTGAARGCCAAGATCAA-GAAAAAGAGGGCATCCCACCAGAC 354376
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| |||| ||||| || ||||| ||| |||| ||| | | ||| |||| ||
Sbjct 354377 CAGCAGAGGTTGATTTTCGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTAT 354436
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| ||||||||| |||||||||||||| ||||| | ||||| ||
Sbjct 354437 AACATTCAAAAAGAGTCGACTTTGCATTTGGTACTGCGTCTTCGTGGTGG 354486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355857837399204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |