Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq124 102 6e-17 >seq124 Length=632428 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || || ||| ||||| |||| || ||||| | Sbjct 447921 ATGCAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTTCT 447862 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||||| ||||| ||||| |||| ||| | Sbjct 447861 GATACTATTGACAAT--GTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACC 447804 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || |||| || || ||||| || | || |||| || | | || ||||||||| Sbjct 447803 AGCAGAGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACA 447744 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| ||| | || ||||| | ||||| || || || Sbjct 447743 ACATACAAAAAGAGTCCACGCTCCACTTGGTGCTCCGTTTACGCGGTGG 447695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| || || || || ||| ||| | || || |||||| | Sbjct 447466 AATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTC 447407 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || ||||| |||||| || || ||||| |||||| | || || Sbjct 447406 CGACACAATTGACAAT--GTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGAC 447349 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 |||||| || ||||||| || || || || | || || | ||| | |||| ||||||| Sbjct 447348 CAGCAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTG-CCGATTA 447290 Query 27966 CAACATCCAAAAAGAG 27981 |||||| ||||| ||| Sbjct 447289 CAACATTCAAAAGGAG 447274 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATG-TCGAAAGCAC 27848 |||||||| || |||||||| || ||||| ||| || || | || | | |||||| | Sbjct 354260 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTC 354319 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| || || || || || ||||| || | || || Sbjct 354320 TGATACCATCGACAAT--GTGAARGCCAAGATCAA-GAAAAAGAGGGCATCCCACCAGAC 354376 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| ||||| || ||||| ||| |||| ||| | | ||| |||| || Sbjct 354377 CAGCAGAGGTTGATTTTCGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTAT 354436 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||||||| |||||||||||||| ||||| | ||||| || Sbjct 354437 AACATTCAAAAAGAGTCGACTTTGCATTTGGTACTGCGTCTTCGTGGTGG 354486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355857837399204