Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq4 100 2e-16
seq124 89.7 4e-13
>seq4
Length=5448771
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 39072 TAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTC 39131
|||||| | || |||||| ||| || || || || |||||||| || ||||| ||||
Sbjct 199561 TAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTC 199620
Query 39132 ATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTC 39191
|||||||| || || ||||| || |||||||||||||| | || | | ||| |||||
Sbjct 199621 CTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTC 199680
Query 39192 CATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATAC 39250
| ||| | | || || | | | | |||||| ||| || || | || ||
Sbjct 199681 C-TGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGG 199739
Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || ||||||| |||||| |||||||| ||||| ||
Sbjct 199740 TCTTCCCCGTCAACGTTTTCACAAAGATCTGCATATT 199776
>seq124
Length=632428
Score = 89.7 bits (98), Expect = 4e-13
Identities = 92/119 (77%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| || | ||| || | |||||| || |||||| |||||||||||| || ||||||||
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGG 39175
|| ||||| |||| || ||||| || || || || || || | |||||||| ||||||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGG 447813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429540092688476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |