Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq124 125 5e-24 seq14 107 1e-18 seq4 107 1e-18 >seq124 Length=632428 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| ||||||||||| || ||||| | || ||||| | | Sbjct 447466 AATGCAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTC 447407 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | || | || ||||| |||||| | || ||||| | Sbjct 447406 CGACACAATTGACAATGTCAAAGCTAAGA-TTCAAGACAAGGAAGGTATCCCTCCAGACC 447348 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | |||| || || ||||| || || ||||| | ||| ||| | | |||||||| Sbjct 447347 AGCAAAGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGCCGATTACA 447288 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| ||||| ||||| || | ||| |||| Sbjct 447287 ACATTCAAAAGGAGTCAACTCTTCATCTAGT 447257 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| || ||||| || || || || ||||| | Sbjct 447921 ATGCAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTTCT 447862 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | |||| |||||| ||||| ||||| | || || || || Sbjct 447861 GATACTATTGACAATGTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACCAG 447802 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | |||| || || || || || || ||||||| || || | | |||||||||| Sbjct 447801 CAGAGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACAAC 447742 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||||||||||||||| Sbjct 447741 ATACAAAAAGAGTCCAC 447725 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || ||| | ||||||||||| |||||||| || ||||| | Sbjct 447238 AATGCAGATTTTTGTGAAGACCTTAACGGGAAAAACAATCACTCTGGAGGTTGAGAGTTC 447179 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | || | | || |||||| || ||||| || | || ||||| || Sbjct 447178 GGATACCATCGACAACGTGAAGGCTAAAATTCAAGATAAAGAGGGCATCCCACCAGACCA 447119 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || || ||||||||||||| | ||||| | ||| || || Sbjct 447118 GCAGAGGCTGATTTTCGCTGGAAAGCAACTGGAAGACGGCAGGACTTTGGCCGACTATAA 447059 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| || | ||||| || Sbjct 447058 TATTCAAAAAGAGTCGACTTCGCATTTGGT 447029 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG-ACTCCAC 23669 ||||| || ||||| ||||||||||| |||||||| ||||| | || | || | | | Sbjct 354260 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTC 354319 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || | || | | || ||||| || | || ||||| | Sbjct 354320 TGATACCATCGACAATGTGAARGCCAAGA--TCAAGAAAAAGAGGGCATCCCACCAGACC 354377 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || || || || || ||||||||| ||| | ||||| | ||| || | Sbjct 354378 AGCAGAGGTTGATTTTCGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTATA 354437 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| ||||||||||| || || ||||| || Sbjct 354438 ACATTCAAAAAGAGTCGACTTTGCATTTGGT 354468 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| |||||||| ||||| | || || || | | Sbjct 447693 ATGCAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTCT 447634 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || || || ||||| ||| | || || || || Sbjct 447633 GATACCATCGACAATGTGAAGGC-CAAGATCCAAGATAAAGAGGGTATTCCACCGGACCA 447575 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || |||||||| ||||| | |||||| | | || ||||| Sbjct 447574 GCAGAGGCTGATTTTCGCGGGTAAACAACTCGAAGATGGCCGCACTCTGGCTGACTACAA 447515 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || ||||| ||||| || Sbjct 447514 TATTCAGAAGGAATCAACATTGCATTTGGT 447485 >seq14 Length=2855554 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||| | || || || || |||||| | ||||| || | | Sbjct 999344 ATGCAGATTTTTGTGAAAACCTTGACTGGCAAGACAATCACTTTGGAAGTGGAGAGCTCC 999403 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | ||| ||| ||||| || || | || ||||| || Sbjct 999404 GATACCATTGATAATGTGAAGGC-AAAGATTCAAGACAAGGAGGGCATCCCACCAGACCA 999462 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || || || ||||| ||||| ||||| | | ||||||| |||||||| Sbjct 999463 ACAGAGGTTGATCTTCGCAGGCAAGCAACTCGAAGATGGCAGAACTTTAGCAGATTACAA 999522 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | ||||| || | | ||||| || || Sbjct 999523 CATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGATTGCGCGGTGG 999570 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || |||||||| | || || || | || Sbjct 999572 ATGCAGATCTTTGTGAAGACACTGACAGGGAAGACGATCACGTTGGAGGTCGAAAGCTCG 999631 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| ||| ||||| || || | || ||||||||| Sbjct 999632 GACACAATCGACAACGTGAAGGCAAAGATTCAAGACAAGGAGGGGATTCCTCCAGATCAA 999691 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || ||||||||||| || | || ||||| | ||||||||| Sbjct 999692 CAGAGATTGATCTTTGCTGGGAAACAACTGGAGGATGGGCGAACTTTGGCGGATTACAAC 999751 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 999752 ATTCAGAAAGAGTCGAC 999768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||| | || || || ||||||||| | ||||| || | | Sbjct 999116 ATGCAGATTTTTGTGAAGACCTTGACAGGCAAGACGATCACTTTGGAAGTGGAGAGCTCT 999175 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | || | | ||||| || || | || || || || Sbjct 999176 GATACCATTGACAATGTGAAAGCCAAGA-TCCAAGACAAGGAGGGCATCCCACCTGACCA 999234 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || || ||||| ||||| | | ||| | | |||||||| Sbjct 999235 ACAGAGGCTGATCTTTGCTGGTAAGCAACTAGAAGATGGTAGGACTCTGGCAGATTACAA 999294 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || || || ||| | || || || | |||||||||| || Sbjct 999295 CATACAGAAGGAATCGACACTGCACTTGGTGCTTCGGTTGCGAGGCGG 999342 >seq4 Length=5448771 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||| | ||||| || || || |||||||| ||||| | Sbjct 199776 AATATGCAGATCTTTGTGAAAACGTTGACGGGGAAGACCATAACTCTCGAGGTTGAGAGC 199717 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || |||| | || ||||| || || ||||||| || Sbjct 199716 TCCGATACCATCGACAATGTGAAGGCAAAGA-TTCAGGACAAGGAGGGAATACCGCCGGA 199658 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || ||||| || || || || || |||| || || ||| |||||| Sbjct 199657 CCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGAACCCTAGCCGATTA 199598 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || || |||||||| | || | || |||||| | || || || Sbjct 199597 CAACATCCAGAAGGAGTCCACGCTCCACCTCGTGTTAAGGCTCCGTGGTGG 199547 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || || || || || |||||||| || || | Sbjct 205448 ATGCAGATCTTCGTGAAAACGCTGACAGGGAAGACCATAACTCTCGAGGTCGAGAGTTCT 205389 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | || ||||| || || ||||||| || || Sbjct 205388 GATACCATCGATAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGAATACCGCCGGACCA 205330 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || ||||| || | || ||| | | ||| ||||| Sbjct 205329 GCAGCGTCTCATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAA 205270 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATC 23840 ||| || ||||||||||| |||| | || ||||| | || ||||| || Sbjct 205269 CATCCAGAAAGAGTCCACCCTACACCTTGTGCTAAGGCTCCGTGGAGGTTC 205219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005266294416