Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq52 105 9e-18 seq5 105 9e-18 >seq52 Length=1204374 Score = 105 bits (116), Expect = 9e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| | || || | || ||||||||||| |||||||| || ||| | ||| || Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 503409 Query 78459 -TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 ||||||| ||||| ||||| || || | ||| ||||| || || || || | ||| | Sbjct 503410 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATAA 503468 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| |||||||| || || || ||| | | ||||| | |||||| |||||| Sbjct 503469 GCATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCA 503528 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||| ||||||||||||| ||| |||||| | || || ||||| Sbjct 503529 GAGTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577 Score = 86.0 bits (94), Expect = 9e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 ||||||| ||| |||||| |||||||| || ||||| |||| |||| || || Sbjct 502533 TTCATATCTAGTGTATAGCTTCTCAAATTCCTCACCCCAGCAATCAGCCAAACCCGGTGC 502592 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA-ACTCGTTTCATAAAGAGAT 78021 |||||||| || | || |||||| | |||| | | || |||| || ||| || |||| Sbjct 502593 CTCATTTGGACAAAACATTGACCACCCTCCAT-TACTTTGGACTCTTTCCATGAATAGAT 502651 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCG 78052 | |||| ||| || ||| |||||||||||| Sbjct 502652 CGGGTACCCAAAGTGCATAAAATAGATCTCG 502682 >seq5 Length=5307744 Score = 105 bits (116), Expect = 9e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAG-ATT 78457 ||||| | || || | || ||||||||||| |||||||| || ||| | ||| | Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 4279774 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| ||||| ||||| || || | ||| ||||| || || || || | ||| | Sbjct 4279775 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTA 4279833 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || |||||||| || || |||| | | ||||| | |||||| |||||| Sbjct 4279834 GCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCA 4279893 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||| ||||||||||||| || |||||||| || || || || Sbjct 4279894 GAGTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942 Score = 95.1 bits (104), Expect = 2e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 ||||||| ||| |||||| |||||||| || ||||| |||| |||| || || Sbjct 4278876 TTCATATCTAGTGTATAGCTTCTCAAATTCCTCACCCCAGCAATCAGCCAAACCTGGCGC 4278935 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA-ACTCGTTTCATAAAGAGAT 78021 |||||||| || | || |||||| || |||| | | || |||| || ||| || |||| Sbjct 4278936 CTCATTTGGACAAAACATTGACCATTCTCCAT-TACTTTGGACTCTTTCCATGAATAGAT 4278994 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||| ||| || ||| |||||||||||| Sbjct 4278995 CAGGTACCCAAAGTGCATAAAATAGATCTCG 4279025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||||| || || | ||| |||| | || ||| || | ||| || Sbjct 4279356 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATGGGCACAATTCCA 4279415 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| || |||||||||||| ||| ||||| || | || ||||| || ||||| Sbjct 4279416 TTAGAGGTCCCATTTGTTCCACGAATGTAACTGCCCATGGCACGAATGTTGTGGATGGAA 4279475 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || || | ||| || || || ||||| || || Sbjct 4279476 ACACCAATACCACCAGCTGATTTGCTAATAACAGCACACTCCTTTAAGGTATCATATATC 4279535 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || |||||||||||||| |||| | ||| |||||||| Sbjct 4279536 CCTTCTATACTGTCATCTTTCATACATACAAGGAAACAGCT 4279576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694659665105280