Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 105 1e-17 seq52 102 1e-16 seq11 87.8 3e-12 >seq5 Length=5307744 Score = 105 bits (116), Expect = 1e-17 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAG-ATT 77052 ||||| | || || | || |||||||||||||| ||||| || ||| | ||| | Sbjct 4279716 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 4279774 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| ||| | | ||| ||||| | ||| ||||| || ||||| || | ||| | Sbjct 4279775 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTA 4279833 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||||| || ||| |||| | | ||||| | |||||| |||||| Sbjct 4279834 GCATGTGTTGAGGTCTCTCCACAACCTTACCCTGAACCTTCAAAAGGTATGACCTTTCCA 4279893 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||| ||||||||||||| || |||||||| || || || || Sbjct 4279894 GAGTTTTGAAACCAAAATAGTCATAATCAAAGTCTCGGTCATATATGAT 4279942 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||||| ||||| | ||| |||| | || ||| || | ||| || Sbjct 4279356 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATGGGCACAATTCCA 4279415 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT-GCACGAATATTACTAATAGA 76872 ||||| || |||||||||||| ||| ||||| || ||| |||||||| || || || Sbjct 4279416 TTAGAGGTCCCATTTGTTCCACGAATGTAACTGCC-CATGGCACGAATGTTGTGGATGGA 4279474 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || || || || ||| || | |||||| || || || ||||| || Sbjct 4279475 AACACCAATACCACCAGCTGATTTGCTAATAACAGCACACTCCTTTAAGGTATCATATAT 4279534 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || |||||||| ||||| |||| | ||| |||||||| Sbjct 4279535 CCCTTCTATACTGTCATCTTTCATACATACAAGGAAACAGCT 4279576 Score = 86.0 bits (94), Expect = 9e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 76498 TTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 ||||||| || |||| | |||||||| || ||||| |||| ||||||| || Sbjct 4278876 TTCATATCTAGTGTATAGCTTCTCAAATTCCTCACCCCAGCAATCAGCCAAACCTGGCGC 4278935 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTA-ACCCGTTTCATAAAGAGAT 76616 ||||| ||||| | || |||||| || |||| | | || || | || ||| || |||| Sbjct 4278936 CTCATTTGGACAAAACATTGACCATTCTCCAT-TACTTTGGACTCTTTCCATGAATAGAT 4278994 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||| ||| || ||| |||||||||||| Sbjct 4278995 CAGGTACCCAAAGTGCATAAAATAGATCTCG 4279025 >seq52 Length=1204374 Score = 102 bits (112), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| | || || | || |||||||||||||| ||||| || ||| | ||| || Sbjct 503351 GTTCCAGAGTTGAAAAGGGTGGGAGATGCATGAGTAAACCACCGTTGAGACA-TAGTGTG 503409 Query 77054 -TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||||| ||| | | ||| ||||| | ||| ||||| || ||||| || | ||| | Sbjct 503410 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATAA 503468 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| |||||||| | || || ||| | | ||||| | |||||| |||||| Sbjct 503469 GCATGTGCTGAGGCCTCTCCACGACCTTCCCCTGAACCTTCAAGAGGTATGACCTTTCCA 503528 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||| ||||||||||||| ||| |||||| | || || ||||| Sbjct 503529 GAGTTTTGAAACCAAAATAGTCGTAATCAAAGTCACGGTCATATATAAT 503577 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||||| ||||| | ||| |||| | || ||| || | ||| || Sbjct 502996 CCTCCTTGGTCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCA 503055 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT-GCACGAATATTACTAATAGA 76872 ||||| || || ||||||||| || ||||| || ||| ||||||||||| ||||| Sbjct 503056 TTAGAGGTTCCGTTTGTTCCACGGATGTAACTGCC-CATAGCACGAATATTGTGGATAGA 503114 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || || || || ||| ||| | |||||| || || || ||||| || Sbjct 503115 AACACCAATGCCACCAGCTGATTTGCTGATAACAGCACACTCCTTTAAGGTATCATATAT 503174 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || ||||||||||| || ||||| | ||| ||||| || Sbjct 503175 ACCTTCTATACTATCGTCTTTCATGCATACAAGGAAACAACT 503216 >seq11 Length=3405507 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| ||||| |||||||| |||||||| ||||| ||| || || || || || Sbjct 2720238 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTGGAAATTAGTTCATTTGAGAAGGTTAGT 2720179 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 || ||||| | ||| |||||||| ||||||||||| || Sbjct 2720178 CCCGGCATCAATCCCCGCTTTTTCAGCCAAAATATGGC 2720141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712925024912640