Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq124 158 3e-33 seq14 154 3e-32 seq15 140 7e-28 seq21 138 3e-27 seq4 138 3e-27 >seq124 Length=632428 Score = 158 bits (174), Expect = 3e-33 Identities = 163/210 (78%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||||||||| |||||||||||||| | |||| || ||||| | Sbjct 447715 CAAG-TGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTCGA 447773 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || |||||||| |||||||||||||||| | ||||||||||| || || Sbjct 447774 GCTGCTTT--CCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTG 447831 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| || ||| | || | | || ||||| || || ||||| ||||| ||||| Sbjct 447832 AATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTTTT 447891 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| |||||||| ||||| || | |||||| Sbjct 447892 GCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||||||||| ||||| ||||| |||||||||||||| | ||| | ||||| Sbjct 447253 GAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATC 447312 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || ||||| || ||||| |||||||| | | ||| |||||||| || Sbjct 447313 TTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTC 447372 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || ||||||| | || | |||| || || || || || | || ||||| Sbjct 447373 TTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGT 447432 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || |||||||| || || ||||| | |||||| Sbjct 447433 CTTTCCCGTGAGCGTTTTGACGAAAATTTGCATT 447466 Score = 132 bits (146), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTC 151964 ||| ||||||||||| || || || ||||| ||||| || || ||||| || ||||| Sbjct 447040 AGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTT-- 447097 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||| || |||||||||||||| | | ||| || || || ||||||||||| Sbjct 447098 CCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCC 447157 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || || | || | | | || |||||||| || || ||||| || ||||| ||||| | Sbjct 447158 TTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAG 447217 Query 152085 GTCTTCACGAAGACCTGCATT 152105 |||||||| || | ||||||| Sbjct 447218 GTCTTCACAAAAATCTGCATT 447238 Score = 111 bits (122), Expect = 4e-19 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| ||||||||||| ||||| || ||||| ||||| || || | | Sbjct 354471 AGTACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCGTGT 354412 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||| || | |||||||||||| | | ||| || || |||| Sbjct 354411 TCCAGTTGCTTT--CCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTT 354354 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTA--CTTCAAGAGTAAT 152068 |||| || || || ||| | || | | | || || || || | || |||| || || Sbjct 354353 CTTG-ATCTTGGCYTTCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAG-GTGAT 354296 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || |||||||||| ||||| Sbjct 354295 GGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || || || || ||||| || || | ||| | |||||||| || ||| || Sbjct 447497 GTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCTTCGAGTTGTTTACCC 447556 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || |||||||||||||||| | || || || || ||||| || || || Sbjct 447557 GCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCTTGGATCTTGGCCTTC 447616 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | | || || || || || || | || || ||||| || ||||| || Sbjct 447617 ACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTT 447676 Query 152088 TTCACGAAGACCTGCAT 152104 |||||||||| ||||| Sbjct 447677 TTCACGAAGATTTGCAT 447693 >seq14 Length=2855554 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || |||||||||||||| || || ||||| ||||||||||| | |||| Sbjct 998649 AGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGA 998590 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || || |||||||||||||| |||||||| | | ||||| || Sbjct 998589 CCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCT 998530 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || ||| || ||| | || | | | || ||||| || || || || || Sbjct 998529 TTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTG 998470 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||||||| |||||||||| ||||| Sbjct 998469 ATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| || || ||||||||||||||||| ||||||||||| |||||| Sbjct 999555 AGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTGCCATCT 999496 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| | |||||| ||||| | | ||| || ||||| ||| Sbjct 999495 TCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCT 999436 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| || ||| | || | | | || || ||||| ||||| | ||| || || Sbjct 999435 TGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTC 999376 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | || ||||| || | |||||| Sbjct 999375 TTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || || ||||||||||| || | ||| || |||||||||| Sbjct 999322 CAAG-TGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCCAGAGTCCTACCATCTTCTA 999264 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| |||||||| ||||| | | ||| || ||||| ||||| | Sbjct 999263 GTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGGA 999204 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| | || | | | || || ||||| ||||| | ||| || || |||| Sbjct 999203 TCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACTTCCAAAGTGATCGTCTTGC 999144 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||||| || | |||||| Sbjct 999143 CTGTCAAGGTCTTCACAAAAATCTGCAT 999116 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || |||||||| || ||||||||||| || ||||||| |||||| Sbjct 999784 GAGGACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATC 999725 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || |||||| || ||||| | ||||| || || | | || || ||||| || Sbjct 999724 CTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTC 999665 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| ||| || || | || | |||| || || || || || | || || || Sbjct 999664 TTGAATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGT 999605 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| |||| |||||| Sbjct 999604 CTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572 >seq15 Length=2492501 Score = 140 bits (154), Expect = 7e-28 Identities = 161/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| |||||||| ||||| || |||||||||||||| || | ||| |||||||| Sbjct 255627 AGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCC 255686 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| | |||||||||||| | | ||||| ||||| | Sbjct 255687 TCCAGCTGCTTT--CCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGT 255744 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || || || | || | | ||||| ||||| || || | || || | Sbjct 255745 CCTGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGG 255804 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || ||||||||||||| ||||||| Sbjct 255805 TCTTCCCGGTAAGGGTCTTCACGAAGATCTGCATT 255839 >seq21 Length=2013095 Score = 138 bits (152), Expect = 3e-27 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 |||||||| || |||||||| || ||||| | ||| || || || || || ||||| | Sbjct 1809652 GTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTT--C 1809595 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 |||||||||| |||||||||||||| | | |||||| || || ||||| || || | Sbjct 1809594 CGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCT 1809535 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 | ||| | |||| | |||| |||||||| || || || ||||| ||||| || || | | Sbjct 1809534 TTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACG 1809475 Query 152086 TCTTCACGAAGACCTGCAT 152104 |||| ||||| | |||||| Sbjct 1809474 TCTTGACGAAAATCTGCAT 1809456 >seq4 Length=5448771 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| || || ||||| || || || |||||||| ||||||||||| ||||| | ||||| Sbjct 205230 GAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCG 205289 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || || || || | ||||||||||| || ||||| || Sbjct 205290 ACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTC 205349 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || ||| | || | | | || |||||||| || || ||||| Sbjct 205350 CTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGT 205409 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || |||||||||| |||||| Sbjct 205410 TATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || || || || ||||| || ||||||||||||||||||| |||| || || || Sbjct 199565 ACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCA 199624 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| || | ||||||||||| || ||||| ||||| || ||| Sbjct 199625 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGA 199684 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||| || ||| | || | | | || || ||||| || || ||||| || || || Sbjct 199685 ATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTCTTC 199744 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| | || ||||| |||| |||||| || Sbjct 199745 CCCGTCAACGTTTTCACAAAGATCTGCATATT 199776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153805247937892