Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq124 158 3e-33
seq14 154 3e-32
seq15 140 7e-28
seq21 138 3e-27
seq4 138 3e-27
>seq124
Length=632428
Score = 158 bits (174), Expect = 3e-33
Identities = 163/210 (78%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||||||||| |||||||||||||| | |||| || ||||| |
Sbjct 447715 CAAG-TGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTCGA 447773
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| || |||||||| |||||||||||||||| | ||||||||||| || ||
Sbjct 447774 GCTGCTTT--CCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTG 447831
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|||||| || ||| | || | | || ||||| || || ||||| ||||| |||||
Sbjct 447832 AATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTTTT 447891
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| |||||||| ||||| || | ||||||
Sbjct 447892 GCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 147 bits (162), Expect = 5e-30
Identities = 161/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || ||||||||||| ||||| ||||| |||||||||||||| | ||| | |||||
Sbjct 447253 GAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCGTCCATC 447312
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || || || ||||| || ||||| |||||||| | | ||| |||||||| ||
Sbjct 447313 TTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGGATACCTTCCTTGTC 447372
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|||||| || ||||||| | || | |||| || || || || || | || |||||
Sbjct 447373 TTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAACCTCCAATGTGATAGT 447432
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| |||||||| || || ||||| | ||||||
Sbjct 447433 CTTTCCCGTGAGCGTTTTGACGAAAATTTGCATT 447466
Score = 132 bits (146), Expect = 1e-25
Identities = 151/201 (75%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 151907 AGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTC 151964
||| ||||||||||| || || || ||||| ||||| || || ||||| || |||||
Sbjct 447040 AGTCGACTCTTTTTGAATATTATAGTCGGCCAAAGTCCTGCCGTCTTCCAGTTGCTTT-- 447097
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| ||||| || |||||||||||||| | | ||| || || || |||||||||||
Sbjct 447098 CCAGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCTTGAATTTTAGCC 447157
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
|| || | || | | | || |||||||| || || ||||| || ||||| ||||| |
Sbjct 447158 TTCACGTTGTCGATGGTATCCGAACTCTCAACCTCCAGAGTGATTGTTTTTCCCGTTAAG 447217
Query 152085 GTCTTCACGAAGACCTGCATT 152105
|||||||| || | |||||||
Sbjct 447218 GTCTTCACAAAAATCTGCATT 447238
Score = 111 bits (122), Expect = 4e-19
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| | ||| ||||||||||| ||||| || ||||| ||||| || || | |
Sbjct 354471 AGTACCAAATGCAAAGTCGACTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCGTGT 354412
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || ||||| || | |||||||||||| | | ||| || || ||||
Sbjct 354411 TCCAGTTGCTTT--CCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTT 354354
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTA--CTTCAAGAGTAAT 152068
|||| || || || ||| | || | | | || || || || | || |||| || ||
Sbjct 354353 CTTG-ATCTTGGCYTTCACATTGTCGATGGTATCAGAGCTTTCCACCCTCCAAG-GTGAT 354296
Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || ||||| || |||||||||| |||||
Sbjct 354295 GGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 354260
Score = 95.1 bits (104), Expect = 3e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967
|| || || || || || ||||| || || | ||| | |||||||| || ||| ||
Sbjct 447497 GTTGATTCCTTCTGAATATTGTAGTCAGCCAGAGTGCGGCCATCTTCGAGTTGTTTACCC 447556
Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027
||||| || |||||||||||||||| | || || || || ||||| || || ||
Sbjct 447557 GCGAAAATCAGCCTCTGCTGGTCCGGTGGAATACCCTCTTTATCTTGGATCTTGGCCTTC 447616
Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087
||| | || | | | || || || || || || | || || ||||| || ||||| ||
Sbjct 447617 ACATTGTCGATGGTATCAGAGCTTTCCACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTT 447676
Query 152088 TTCACGAAGACCTGCAT 152104
|||||||||| |||||
Sbjct 447677 TTCACGAAGATTTGCAT 447693
>seq14
Length=2855554
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| || || |||||||||||||| || || ||||| ||||||||||| | ||||
Sbjct 998649 AGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGA 998590
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
||||| || || || || |||||||||||||| |||||||| | | ||||| ||
Sbjct 998589 CCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTGGTCGGGAGGAATTCCCTCT 998530
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| ||||| || ||| || ||| | || | | | || ||||| || || || || ||
Sbjct 998529 TTATCTTGGATCTTTGCCTTTACATTGTCAATGGTATCCGAACTTTCCACCTCGAGGGTG 998470
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| |||||||| |||||||||| |||||
Sbjct 998469 ATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| || || ||||||||||||||||| ||||||||||| ||||||
Sbjct 999555 AGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAAAGTTCTGCCATCT 999496
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| | |||||| ||||| | | ||| || ||||| |||
Sbjct 999495 TCGAGTTGCTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCT 999436
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| ||| || ||| | || | | | || || ||||| ||||| | ||| || ||
Sbjct 999435 TGAATCTTTGCCTTCACATTATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTC 999376
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || | || ||||| || | ||||||
Sbjct 999375 TTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 999344
Score = 120 bits (132), Expect = 7e-22
Identities = 152/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || || || || || ||||||||||| || | ||| || ||||||||||
Sbjct 999322 CAAG-TGCAGTGTCGATTCCTTCTGTATGTTGTAATCTGCCAGAGTCCTACCATCTTCTA 999264
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || || ||||| |||||||| ||||| | | ||| || ||||| ||||| |
Sbjct 999263 GTTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGGA 999204
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || ||| ||| | || | | | || || ||||| ||||| | ||| || || ||||
Sbjct 999203 TCTTGGCTTTCACATTGTCAATGGTATCAGAGCTCTCCACTTCCAAAGTGATCGTCTTGC 999144
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | |||||||| || | ||||||
Sbjct 999143 CTGTCAAGGTCTTCACAAAAATCTGCAT 999116
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || || || |||||||| || ||||||||||| || ||||||| ||||||
Sbjct 999784 GAGGACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTTCGCCCATC 999725
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || |||||| || ||||| | ||||| || || | | || || ||||| ||
Sbjct 999724 CTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTC 999665
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|||||| ||| || || | || | |||| || || || || || | || || ||
Sbjct 999664 TTGAATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGT 999605
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || |||||||| |||| ||||||
Sbjct 999604 CTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572
>seq15
Length=2492501
Score = 140 bits (154), Expect = 7e-28
Identities = 161/215 (75%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||| |||||||| ||||| || |||||||||||||| || | ||| ||||||||
Sbjct 255627 AGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCC 255686
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || ||||| | |||||||||||| | | ||||| ||||| |
Sbjct 255687 TCCAGCTGCTTT--CCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGT 255744
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| ||||| || || || | || | | ||||| ||||| || || | || || |
Sbjct 255745 CCTGAATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGG 255804
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
| || || || || ||||||||||||| |||||||
Sbjct 255805 TCTTCCCGGTAAGGGTCTTCACGAAGATCTGCATT 255839
>seq21
Length=2013095
Score = 138 bits (152), Expect = 3e-27
Identities = 151/199 (76%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965
|||||||| || |||||||| || ||||| | ||| || || || || || ||||| |
Sbjct 1809652 GTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTT--C 1809595
Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025
|||||||||| |||||||||||||| | | |||||| || || ||||| || || |
Sbjct 1809594 CGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCT 1809535
Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085
| ||| | |||| | |||| |||||||| || || || ||||| ||||| || || | |
Sbjct 1809534 TTACATTGTCTATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACG 1809475
Query 152086 TCTTCACGAAGACCTGCAT 152104
|||| ||||| | ||||||
Sbjct 1809474 TCTTGACGAAAATCTGCAT 1809456
>seq4
Length=5448771
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| || || ||||| || || || |||||||| ||||||||||| ||||| | |||||
Sbjct 205230 GAGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCG 205289
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || || || || || | ||||||||||| || ||||| ||
Sbjct 205290 ACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTC 205349
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || || ||| | || | | | || |||||||| || || |||||
Sbjct 205350 CTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGT 205409
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || || || |||||||||| ||||||
Sbjct 205410 TATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
|| || || || || ||||| || ||||||||||||||||||| |||| || || ||
Sbjct 199565 ACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCA 199624
Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015
|| || || || ||||| || | ||||||||||| || ||||| ||||| || |||
Sbjct 199625 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGA 199684
Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075
|| ||| || ||| | || | | | || || ||||| || || ||||| || || ||
Sbjct 199685 ATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTTATGGTCTTC 199744
Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| | || ||||| |||| |||||| ||
Sbjct 199745 CCCGTCAACGTTTTCACAAAGATCTGCATATT 199776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153805247937892
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