Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq15 143 2e-29
seq4 127 1e-24
seq124 122 6e-23
seq21 118 8e-22
seq14 118 8e-22
seq60 82.4 5e-11
>seq15
Length=2492501
Score = 143 bits (158), Expect = 2e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| ||| |||||| |||||||||||||| || || | | | || |||
Sbjct 255630 ACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCC 255689
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || ||||||||||| | |||||| |||| ||| | || ||||| |||
Sbjct 255690 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGA 255749
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||||| | | || || || | | |||||||||| || || |||||
Sbjct 255750 ATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTCTTC 255809
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||||||||||||||| |||||
Sbjct 255810 CCGGTAAGGGTCTTCACGAAGATCTGCAT 255838
>seq4
Length=5448771
Score = 127 bits (140), Expect = 1e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
|| || ||||| ||||| |||||| |||||| ||||||||||||||||| || ||
Sbjct 199556 AGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGG 199615
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
|||| || |||||||| || |||||||| | ||||||||| || | || | || |||
Sbjct 199616 CCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCC 199675
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||||| | | ||||| |||| | || ||||| | ||
Sbjct 199676 TTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTT 199735
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| | || ||||| ||||| |||||
Sbjct 199736 ATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773
Score = 104 bits (114), Expect = 2e-17
Identities = 156/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGC 44177
|| || | ||| ||||| || ||| ||| || ||||||||||| ||||| ||||| |
Sbjct 205231 AGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTT--C 205288
Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237
| | || ||||||||||| || ||||| || | ||||||||| || | || | || |
Sbjct 205289 GACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCT 205348
Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297
|||| ||| ||||| ||||| | | ||||| || | || ||||| | |
Sbjct 205349 CCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAG 205408
Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||| || || || || ||||||||||| |||||
Sbjct 205409 TTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448
>seq124
Length=632428
Score = 122 bits (134), Expect = 6e-23
Identities = 169/234 (72%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
|||||| || | || | | ||| || ||||| || ||||||||| |||||||||||
Sbjct 447235 CATTCCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATC 447294
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
||| || || | || || |||||||| || || || || | | ||||| ||||
Sbjct 447295 GGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGG 447354
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGA 44283
||| | ||||||||| || ||||| |||| || ||| | || ||||||| |
Sbjct 447355 AGGGATACCTTCCTTGTCTTGAATCTT-AGCTTTGACATTGT--CAATTGTGTCGGAGCT 447411
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||||| || || |||||||||||||| || || ||||| ||||||||
Sbjct 447412 TTCAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| |||||| ||| ||||| |||||||||||||| || || |||| ||
Sbjct 447712 CACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTC 447771
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||| | | |||||| || | || | |||||||| |||
Sbjct 447772 GAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTG 447831
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
|| || ||| || ||| | || || || | ||| ||||| | ||||| ||
Sbjct 447832 AATTTTGGCCTTTACATTGT--CAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTT 447889
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| || ||||| || || |||||
Sbjct 447890 TTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||| ||||| ||||| || ||||| | | ||| ||||| ||||| || || ||
Sbjct 354451 CTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCGTGTTCCAGTTGCTTTCCAGCGAA 354392
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
||||| | |||||| |||| || | || || ||||| | ||||| |||| |
Sbjct 354391 AATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTTCT-TGATCTTGGCYTTCACATT 354333
Query 44266 TCCTATGGTGTCGGCGGATTCCACC-TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
| ||||| || | | ||||||| |||| || || || ||||| |||||||| ||||
Sbjct 354332 GTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCA 354273
Query 44325 CGAAGATTTGCAT 44337
|||||||||||||
Sbjct 354272 CGAAGATTTGCAT 354260
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||||||||| | || | | ||||| || | || ||||| || || |||||
Sbjct 447460 TTGCATTCCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTA 447519
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| || || ||| | || || || || || || || || |||| | |||||| ||
Sbjct 447520 GTCAGCCAGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTC 447579
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
| || | ||| || || || ||||| ||||| | | ||||| || | |
Sbjct 447580 CGGTGGAATACCCTCTTTATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCT 447639
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||||| || || || ||||| |||||||| |||||||||||||||||
Sbjct 447640 TTCCACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693
>seq21
Length=2013095
Score = 118 bits (130), Expect = 8e-22
Identities = 155/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| ||| |||||| || || |||||||| ||||| | | || |||
Sbjct 1809892 ACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCC 1809833
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
||||||||||| || || |||| | |||||||| | ||| | ||| ||||| |||
Sbjct 1809832 AGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGA 1809773
Query 44249 ATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
|| || |||| || ||| | |||||||||| | |||||||||| || || |||
Sbjct 1809772 ATTTTG-GCTTTCACATTGT--CAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTC 1809716
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || | ||| ||||| |||||||||||
Sbjct 1809715 TTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684
Score = 91.5 bits (100), Expect = 1e-13
Identities = 163/236 (69%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || || || | | ||||| ||| | || |||||| |||||||| ||
Sbjct 1809689 TTGCATCCCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATA 1809630
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
||||| || | |||| ||||||||||| ||||| ||||||| | |||||| ||
Sbjct 1809629 GTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTC 1809570
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
|| || | || || || || ||||| ||| || ||| |||||||||| |
Sbjct 1809569 TGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGT--CTATGGTGTCCGAA 1809512
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||| ||||| || || || || | ||||| ||||| || |||||
Sbjct 1809511 CTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456
>seq14
Length=2855554
Score = 118 bits (130), Expect = 8e-22
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGT 44186
|| ||||| || || ||| || || ||||||||||| || | ||| ||| | || |
Sbjct 999780 ACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTT--CGCCCATCCT 999723
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
|||| || ||||| ||||||||||| | ||| ||||||| ||| | || ||||| ||
Sbjct 999722 CCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTT 999663
Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||||| | | || ||||| | | ||| ||||||| ||| |||||||
Sbjct 999662 GAATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCT 999603
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || || |||||||| ||||| |||||
Sbjct 999602 TCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572
Score = 93.3 bits (102), Expect = 3e-14
Identities = 166/239 (69%), Gaps = 5/239 (2%)
Strand=Plus/Minus
Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160
||||| ||| || || | ||||| | |||||| ||||| || ||||| ||||| ||
Sbjct 998668 TATTTGCATCCCACCGCGAAGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATT 998609
Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220
||||||||| || || | || || || ||||| || || ||||| | | |||||
Sbjct 998608 GTAATCGGCAAGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTG 998549
Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCG 44278
|| | ||| | || || || || ||||| ||| || ||| | ||||| ||
Sbjct 998548 GTCGGGAGGAATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTGT--CAATGGTATCC 998491
Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||||| | || || || || || ||||| || |||||||||||||||||
Sbjct 998490 GAACTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|| || ||||| ||||| || || || || |||| || |||||||| || |||||
Sbjct 998850 TCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAA 998791
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|||| | ||| ||||| | ||| | ||| ||||| || || || ||||| |
Sbjct 998790 ATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATCTTGGATTTTAGCCTTCACATTG 998731
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| || || || | ||||||||| | ||| || || || || || |||||||||||
Sbjct 998730 TCAATCGTATCAGAACTTTCCACCTCAAGCGTGATGGTTTTGCCAGTAAGGGTCTTCACA 998671
Query 44327 AAGATTTGCAT 44337
|| ||||||||
Sbjct 998670 AATATTTGCAT 998660
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 44147 TCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204
|||||||||||||||||||| || |||| | | || || || ||||| || || |
Sbjct 999534 TCCTTTTGGATGTTGTAATCTGCTAAAGTT--CTGCCATCTTCGAGTTGCTTGCCTGCGA 999477
Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264
||||||| | ||| || |||| || | || ||||| || ||||| |||||
Sbjct 999476 AGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTTGCCTTCACAT 999417
Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
| | ||||| |||| | ||||| |||| || || ||||| || || | ||| ||||
Sbjct 999416 TATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCA 999357
Query 44325 CGAAGATTTGCAT 44337
| || || |||||
Sbjct 999356 CAAAAATCTGCAT 999344
>seq60
Length=1131370
Score = 82.4 bits (90), Expect = 5e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || || || ||||| ||||||||||| || ||||||||||||||| ||||| ||
Sbjct 437119 CCTCCCCTGAGCCTCAAGACCAGGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCA 437178
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
||| || | || |||| ||||| || ||||| || || | ||||| || | ||
Sbjct 437179 AGTGTTCGACCATCATCCAATTGCTTACCAGCAAAAATTAACCTTTGCTGGTCAGGTGGG 437238
Query 44231 ACACCTTCCTTTTCC 44245
| |||||| || |||
Sbjct 437239 ATACCTTCTTTGTCC 437253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359985784473084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |