Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq15 143 2e-29 seq4 127 1e-24 seq124 122 6e-23 seq21 118 8e-22 seq14 118 8e-22 seq60 82.4 5e-11 >seq15 Length=2492501 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| |||||||||||||| || || | | | || ||| Sbjct 255630 ACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCCAGAGTCCTCCCATCCTCC 255689 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||||||||| | |||||| |||| ||| | || ||||| ||| Sbjct 255690 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCCTGA 255749 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | || || || | | |||||||||| || || ||||| Sbjct 255750 ATCTTCGCCTTCACGTTGTCAATCGTATCTGAGCTCTCCACCTCCAAGGTGATGGTCTTC 255809 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||||||||| ||||| Sbjct 255810 CCGGTAAGGGTCTTCACGAAGATCTGCAT 255838 >seq4 Length=5448771 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 || || ||||| ||||| |||||| |||||| ||||||||||||||||| || || Sbjct 199556 AGCCTTAACACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGG 199615 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 |||| || |||||||| || |||||||| | ||||||||| || | || | || ||| Sbjct 199616 CCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGCGGTATTCCCTCC 199675 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||||| | | ||||| |||| | || ||||| | || Sbjct 199676 TTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCGAGAGTT 199735 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| | || ||||| ||||| ||||| Sbjct 199736 ATGGTCTTCCCCGTCAACGTTTTCACAAAGATCTGCAT 199773 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGC 44177 || || | ||| ||||| || ||| ||| || ||||||||||| ||||| ||||| | Sbjct 205231 AGCCTTAGCACAAGGTGTAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTT--C 205288 Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237 | | || ||||||||||| || ||||| || | ||||||||| || | || | || | Sbjct 205289 GACCATCCTCCAGCTGCTTACCAGCAAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCT 205348 Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 |||| ||| ||||| ||||| | | ||||| || | || ||||| | | Sbjct 205349 CCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCAGAACTCTCGACCTCGAGAG 205408 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| || || || || ||||||||||| ||||| Sbjct 205409 TTATGGTCTTCCCTGTCAGCGTTTTCACGAAGATCTGCAT 205448 >seq124 Length=632428 Score = 122 bits (134), Expect = 6e-23 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | | ||| || ||||| || ||||||||| ||||||||||| Sbjct 447235 CATTCCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATC 447294 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || || | || || |||||||| || || || || | | ||||| |||| Sbjct 447295 GGCAAGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGG 447354 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGA 44283 ||| | ||||||||| || ||||| |||| || ||| | || ||||||| | Sbjct 447355 AGGGATACCTTCCTTGTCTTGAATCTT-AGCTTTGACATTGT--CAATTGTGTCGGAGCT 447411 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| || || |||||||||||||| || || ||||| |||||||| Sbjct 447412 TTCAACCTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| |||||| ||| ||||| |||||||||||||| || || |||| || Sbjct 447712 CACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCCAGGGTTCGGCCGTCTTC 447771 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | | |||||| || | || | |||||||| ||| Sbjct 447772 GAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCCTG 447831 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || ||| || ||| | || || || | ||| ||||| | ||||| || Sbjct 447832 AATTTTGGCCTTTACATTGT--CAATAGTATCAGAACTTTCAACCTCAAGGGTAATTGTT 447889 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || ||||| || || ||||| Sbjct 447890 TTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| ||||| ||||| || ||||| | | ||| ||||| ||||| || || || Sbjct 354451 CTCTTTTTGAATGTTATAGTCGGCCAAAGTCCTGCCGTGTTCCAGTTGCTTTCCAGCGAA 354392 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| | |||||| |||| || | || || ||||| | ||||| |||| | Sbjct 354391 AATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTTTCT-TGATCTTGGCYTTCACATT 354333 Query 44266 TCCTATGGTGTCGGCGGATTCCACC-TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | ||||| || | | ||||||| |||| || || || ||||| |||||||| |||| Sbjct 354332 GTCGATGGTATCAGAGCTTTCCACCCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCA 354273 Query 44325 CGAAGATTTGCAT 44337 ||||||||||||| Sbjct 354272 CGAAGATTTGCAT 354260 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||||||||| | || | | ||||| || | || ||||| || || ||||| Sbjct 447460 TTGCATTCCCCCACGAAGACGAAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTA 447519 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || ||| | || || || || || || || || |||| | |||||| || Sbjct 447520 GTCAGCCAGAGTGCGGCCATCTTCGAGTTGTTTACCCGCGAAAATCAGCCTCTGCTGGTC 447579 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | ||| || || || ||||| ||||| | | ||||| || | | Sbjct 447580 CGGTGGAATACCCTCTTTATCTTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGCT 447639 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || || || ||||| |||||||| ||||||||||||||||| Sbjct 447640 TTCCACCTCCAAGGTGATGGTTTTTCCAGTGAGGGTTTTCACGAAGATTTGCAT 447693 >seq21 Length=2013095 Score = 118 bits (130), Expect = 8e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| || || |||||||| ||||| | | || ||| Sbjct 1809892 ACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTCCTTCCATCCTCC 1809833 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||||||||| || || |||| | |||||||| | ||| | ||| ||||| ||| Sbjct 1809832 AGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGA 1809773 Query 44249 ATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || |||| || ||| | |||||||||| | |||||||||| || || ||| Sbjct 1809772 ATTTTG-GCTTTCACATTGT--CAATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTC 1809716 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||| ||||| ||||||||||| Sbjct 1809715 TTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || || || | | ||||| ||| | || |||||| |||||||| || Sbjct 1809689 TTGCATCCCTCCCCTGAGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATA 1809630 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || | |||| ||||||||||| ||||| ||||||| | |||||| || Sbjct 1809629 GTCGGCCAGAGTCCTACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTC 1809570 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 || || | || || || || ||||| ||| || ||| |||||||||| | Sbjct 1809569 TGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTTACATTGT--CTATGGTGTCCGAA 1809512 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| ||||| || || || || | ||||| ||||| || ||||| Sbjct 1809511 CTCTCAACCTCCAGGGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 >seq14 Length=2855554 Score = 118 bits (130), Expect = 8e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGT 44186 || ||||| || || ||| || || ||||||||||| || | ||| ||| | || | Sbjct 999780 ACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAAAGTT--CGCCCATCCT 999723 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||| || ||||| ||||||||||| | ||| ||||||| ||| | || ||||| || Sbjct 999722 CCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTT 999663 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | || ||||| | | ||| ||||||| ||| ||||||| Sbjct 999662 GAATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCTTTCGACCTCCAACGTGATCGTCT 999603 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||| ||||| ||||| Sbjct 999602 TCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/239 (69%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | ||||| | |||||| ||||| || ||||| ||||| || Sbjct 998668 TATTTGCATCCCACCGCGAAGTCTAAGCACCAGATGAAGAGTAGATTCCTTCTGGATATT 998609 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||||||||| || || | || || || ||||| || || ||||| | | ||||| Sbjct 998608 GTAATCGGCAAGGGTTCGACCATCCTCGAGTTGCTTACCAGCGAAGATAAGCCTTTGCTG 998549 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCG 44278 || | ||| | || || || || ||||| ||| || ||| | ||||| || Sbjct 998548 GTCGGGAGGAATTCCCTCTTTATCTTGGATCTTTGCCTTTACATTGT--CAATGGTATCC 998491 Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||| | || || || || || ||||| || ||||||||||||||||| Sbjct 998490 GAACTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 998432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || ||||| ||||| || || || || |||| || |||||||| || ||||| Sbjct 998850 TCTTTCTGGATATTGTAGTCAGCAAGAGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAA 998791 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||| | ||| ||||| | ||| | ||| ||||| || || || ||||| | Sbjct 998790 ATCAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATCTTGGATTTTAGCCTTCACATTG 998731 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || || || | ||||||||| | ||| || || || || || ||||||||||| Sbjct 998730 TCAATCGTATCAGAACTTTCCACCTCAAGCGTGATGGTTTTGCCAGTAAGGGTCTTCACA 998671 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 998670 AATATTTGCAT 998660 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||||||||||||||||| || |||| | | || || || ||||| || || | Sbjct 999534 TCCTTTTGGATGTTGTAATCTGCTAAAGTT--CTGCCATCTTCGAGTTGCTTGCCTGCGA 999477 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 ||||||| | ||| || |||| || | || ||||| || ||||| ||||| Sbjct 999476 AGATCAACCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTTGCCTTCACAT 999417 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | ||||| |||| | ||||| |||| || || ||||| || || | ||| |||| Sbjct 999416 TATCAATGGTATCGGAGCTCTCCACTTCCAAAGTGATTGTCTTGCCAGTCAAGGTTTTCA 999357 Query 44325 CGAAGATTTGCAT 44337 | || || ||||| Sbjct 999356 CAAAAATCTGCAT 999344 >seq60 Length=1131370 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || ||||| ||||||||||| || ||||||||||||||| ||||| || Sbjct 437119 CCTCCCCTGAGCCTCAAGACCAGGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCA 437178 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| || | || |||| ||||| || ||||| || || | ||||| || | || Sbjct 437179 AGTGTTCGACCATCATCCAATTGCTTACCAGCAAAAATTAACCTTTGCTGGTCAGGTGGG 437238 Query 44231 ACACCTTCCTTTTCC 44245 | |||||| || ||| Sbjct 437239 ATACCTTCTTTGTCC 437253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359985784473084