Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq124 201 3e-46 seq14 194 4e-44 seq15 159 8e-34 seq4 159 8e-34 seq21 156 1e-32 seq60 100 7e-16 seq17 89.7 1e-12 >seq124 Length=632428 Score = 201 bits (222), Expect = 3e-46 Identities = 168/206 (82%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| ||||| || ||||| | ||||| |||||||| ||| Sbjct 447462 CAAATTTTCGTCAAAACGCTCACGGGAAAGACTATCACATTGGAGGTTGAAAGCTCCGAC 447403 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| |||||||| ||||| ||||| |||||||| ||||||||| Sbjct 447402 ACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAGCAA 447343 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || ||||| || || ||||| ||||||||| |||||||||||||||| ||| | Sbjct 447342 AGGCTAATTTTCGCAGGCAAGCAGCTTGAAGATGGACGGACTCTTGCCGATTACAACATT 447283 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || ||||| || ||||| || Sbjct 447282 CAAAAGGAGTCAACTCTTCATCTAGT 447257 Score = 168 bits (186), Expect = 2e-36 Identities = 158/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| ||||| |||||||| |||||| | |||||||||||||| || Sbjct 447690 CAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTCTGAT 447631 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| || || ||||| || || || ||||||||||| Sbjct 447630 ACCATCGACAATGTGAAGGCCAAGATCCAAGATAAAGAGGGTATTCCACCGGACCAGCAG 447571 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || ||||| || ||||| ||||||||||| | ||||| || || || || | Sbjct 447570 AGGCTGATTTTCGCGGGTAAACAACTCGAAGATGGCCGCACTCTGGCTGACTACAATATT 447511 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || ||||||||| ||||| Sbjct 447510 CAGAAGGAATCAACATTGCAT 447490 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||||||||| || ||||| || ||||| ||||| ||||| || || Sbjct 447918 CAGATATTTGTGAAAACTCTCACCGGCAAAACAATTACCCTTGAGGTTGAAAGTTCTGAT 447859 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||||||||| |||||||| || ||||||||||| Sbjct 447858 ACTATTGACAATGTAAAGGCCAAAATTCAGGACAAGGAAGGAATTCCACCGGACCAGCAG 447799 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||| ||||| ||||||||||| || | || || |||||||| ||| | Sbjct 447798 AGGCTAATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCCGATTACAACATA 447739 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || || || || |||| Sbjct 447738 CAAAAAGAGTCCACGCTCCA-CTTG 447715 Score = 156 bits (172), Expect = 1e-32 Identities = 157/202 (78%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGA-GGTGGAAAGCTCAGA 177982 ||||| ||||||||||| ||||| |||||||| |||||| | || |||||||||||| || Sbjct 354263 CAAATCTTCGTGAAAACCCTCACTGGAAAAACCATCACCTTGGAGGGTGGAAAGCTCTGA 354322 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| || || || |||| ||| || ||||| || ||||| || |||||||| Sbjct 354323 TACCATCGACAATGTGAARGCCAAGA-TCAAGAAAAAGAGGGCATCCCACCAGACCAGCA 354381 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | | || ||||| ||||| || || ||| | || |||||| | ||||| |||||| | Sbjct 354382 GAGGTTGATTTTCGCTGGAAAGCAACTGGAACACGGCAGGACTTTGGCCGACTATAACAT 354441 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 |||||||| || || ||||| Sbjct 354442 TCAAAAAGAGTCGACTTTGCAT 354463 >seq14 Length=2855554 Score = 194 bits (214), Expect = 4e-44 Identities = 172/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||||||||| || ||||| |||||||||||||||||||| || || Sbjct 998435 CAAATCTTCGTGAAAACTCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGTTCGGAT 998494 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||| || || ||||| ||||| ||||| ||||||||| Sbjct 998495 ACCATTGACAATGTAAAGGCAAAGATCCAAGATAAAGAGGGAATTCCTCCCGACCAGCAA 998554 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||||||||| || || || ||||| ||||| | || ||||||||||| || || Sbjct 998555 AGGCTTATCTTCGCTGGTAAGCAACTCGAGGATGGTCGAACCCTTGCCGATTACAATATC 998614 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || || ||||| || | ||||| Sbjct 998615 CAGAAGGAATCTACTCTTCATCTGGTGCTTAGACT 998649 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| | || || || || ||||| | || ||||| ||||| || Sbjct 999347 CAGATTTTTGTGAAAACCTTGACTGGCAAGACAATCACTTTGGAAGTGGAGAGCTCCGAT 999406 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||||||| ||||| || || ||||| || ||||| || Sbjct 999407 ACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAACAG 999466 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||| || || || ||||||||||| || ||| | || ||||| ||| || Sbjct 999467 AGGTTGATCTTCGCAGGCAAGCAACTCGAAGATGGCAGAACTTTAGCAGATTACAACATC 999526 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| |||||||| |||||| Sbjct 999527 CAAAAGGAATCAACTCTGCAT 999547 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || || || || ||||| ||||| || ||||||||||| || || Sbjct 998663 CAAATATTTGTGAAGACCCTTACTGGCAAAACCATCACGCTTGAGGTGGAAAGTTCTGAT 998722 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || || || || || || |||||||| || || || Sbjct 998723 ACGATTGACAATGTGAAGGCTAAAATCCAAGATAAGGAGGGTATCCCTCCTGATCAACAG 998782 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || || || || ||||| || || || | |||||||| || || || || Sbjct 998783 AGGCTGATTTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACTCTTGCTGACTACAATATC 998842 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || |||||||| || ||||| Sbjct 998843 CAGAAAGAATCTACTTTGCAT 998863 >seq15 Length=2492501 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||| | |||||||| |||||||| Sbjct 255835 CAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACCTTGGAGGTGGAGAGCTCAGAT 255776 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||||||||| || ||||| ||||| |||||||| Sbjct 255775 ACGATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 255716 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| ||||| || ||||| |||||||| || ||||| ||| || Sbjct 255715 AGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGGAGGACTCTGGCTGATTACAACATC 255656 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 255655 CAGAAGGAGTCCACTCTTCACCTTGT 255630 >seq4 Length=5448771 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || ||||| || || || || |||||||| || || || || Sbjct 205445 CAGATCTTCGTGAAAACGCTGACAGGGAAGACCATAACTCTCGAGGTCGAGAGTTCTGAT 205386 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||||| || ||||| || ||||||||||| Sbjct 205385 ACCATCGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATACCGCCGGACCAGCAG 205326 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||||| || ||||| | ||||||||||| || ||| || Sbjct 205325 CGTCTCATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAACATC 205266 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 205265 CAGAAAGAGTCCACCCTACACCTTGT 205240 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | || || || || || || |||||||| || ||||| || Sbjct 199770 CAGATCTTTGTGAAAACGTTGACGGGGAAGACCATAACTCTCGAGGTTGAGAGCTCCGAT 199711 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||||||||||||| || ||||| || ||||||||||| Sbjct 199710 ACCATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCGGACCAGCAG 199651 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || |||||||| ||| || Sbjct 199650 CGTCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGAACCCTAGCCGATTACAACATC 199591 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || || || || || ||| Sbjct 199590 CAGAAGGAGTCCACGCTCCACCTCGTGTTAAGGCTC 199555 >seq21 Length=2013095 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| | || || || || ||||| || |||||||| ||||| ||| Sbjct 1809687 CAAATCTTTGTGAAAACCTTGACTGGGAAGACCATCACTCTGGAGGTGGAGAGCTCCGAC 1809746 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||||||||| || || || |||||||| |||||| Sbjct 1809747 ACCATTGACAATGTGAAAGCCAAAATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAA 1809806 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || ||||| || || ||||| || |||||||||||||| || ||||| || | Sbjct 1809807 AGGCTGATTTTCGCAGGGAAGCAGCTGGAGGATGGAAGGACTCTCGCTGATTACAATATT 1809866 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 1809867 CAGAAGGAGTCCACTCTTCACCTTGT 1809892 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || ||||| || ||||| ||||| || || || ||| Sbjct 1809459 CAGATTTTCGTCAAGACGTTGACCGGGAAAACCATTACCCTGGAGGTTGAGAGTTCGGAC 1809518 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| || |||||||| |||||||| || |||||||| Sbjct 1809519 ACCATAGACAATGTAAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAGCAG 1809578 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||||||||| ||||| || || || |||||||| ||||| |||||| || Sbjct 1809579 AGGCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTAGGACTCTGGCCGACTATAACATC 1809638 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 1809639 CAGAAGGAGTCTACCTTGCA-CTTG 1809662 >seq60 Length=1131370 Score = 100 bits (110), Expect = 7e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 178012 AGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCG 178071 ||||||||||||| ||||| || ||||||||| | | || || || || || || | | Sbjct 437254 AGGACAAAGAAGGTATCCCACCTGACCAGCAAAGGTTAATTTTTGCTGGTAAGCAATTGG 437195 Query 178072 AAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 | ||||| | || ||||| ||||||||| ||||||| || ||||| || || || || | Sbjct 437194 ATGATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAGTCAACCCTTCACCTGGTCT 437135 Query 178132 TGAGACTCAG 178141 |||| ||||| Sbjct 437134 TGAGGCTCAG 437125 >seq17 Length=2382667 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| ||||| |||||||||||| |||||||||||||||| || ||||| || ||||| | Sbjct 2194410 AGGTATCCCCCCGGACCAGCAAAGACTTATCTTCGCCGGGAAGCAGCTTGAGGATGGGCG 2194469 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||| ||||| || || |||| |||| Sbjct 2194470 AACTCTCGCCGACTACAATATCCAGAAAG 2194498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203714975208088