Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq21 105 6e-18
seq124 102 8e-17
seq15 91.5 1e-13
seq14 86.0 6e-12
>seq21
Length=2013095
Score = 105 bits (116), Expect = 6e-18
Identities = 159/222 (72%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| |||| || ||||||||| ||||||||||||| || || |
Sbjct 1809673 AGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTA 1809614
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || |||||||| |||||||| ||||| | ||| ||||| | || | | |||
Sbjct 1809613 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCT 1809554
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTCCACCTCCAC 41820
|||| | || | || || | || | | | ||||| ||| ||| |||||||
Sbjct 1809553 TTGT-CTTGGATCTTAGCCTTTACATTGTCTATGGTGTC---CGAACTCTCAACCTCCAG 1809498
Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || ||||| || |||| |||||| ||||||||||||||
Sbjct 1809497 GGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| || || || ||||| || |||||||||||||||||| || |
Sbjct 1809454 CCACCACGAAGACGCAAGACAAGGTGCAGGGTCGACTCCTTCTGAATGTTATAATCAGCA 1809395
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || || ||||| ||||| || || || | |||||||||| |||
Sbjct 1809394 AGGGTGCGACCGTCCTCCAGTTGCTTCCCGGCAAAGATTAGTCTTTGTTGGTCCGGGGGG 1809335
Query 41756 ACGCTCTCCTT 41766
| || ||||||
Sbjct 1809334 ATGCCCTCCTT 1809324
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| |||||||||||| || || || | |
Sbjct 1809910 CCACCACGGAGACGCAGGACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCG 1809851
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | || || |||||||| || ||||| ||||| | || || |||| |||
Sbjct 1809850 AGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGA 1809791
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| |||| |||| || | | | |||||| ||||||
Sbjct 1809790 ATACCCTCCTTGTCC-TGAATTTTGGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCAC 1809732
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || || |||| || || || || || |||||
Sbjct 1809731 CTCCAGAGTGATGGTCTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684
>seq124
Length=632428
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||||| ||| | ||||| || |||||| ||| || || ||||| || ||||
Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||||||||| || ||||| || || | ||| ||||||| |||
Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| |||| || | || | | | ||| || || ||
Sbjct 447815 ATTCCTTCCTTGTCC-TGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAAC 447873
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || ||||| || || || || || || || ||||||||
Sbjct 447874 CTCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||| ||||| || || |||||| |||||||| || ||||
Sbjct 447239 CCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCA 447298
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || ||||||||||| ||||| || || | || ||||| | ||
Sbjct 447299 AGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGG 447358
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||| | ||| | || |||| || | | | |||||| || ||
Sbjct 447359 ATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAAC 447417
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| || || || || ||||| ||||| || |||||||| |||||
Sbjct 447418 CTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465
>seq15
Length=2492501
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| ||||||||| ||||| || || |
Sbjct 255612 CCACCTCGGAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCC 255671
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | | | || || |||||||| || || || |||| | ||| ||||| | |||
Sbjct 255672 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 255731
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812
| | |||||||||| ||| | || || | ||| | || | || || || ||||
Sbjct 255732 ATTCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCA-ATCGTATCT-GAGCTCTCC 255788
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| || || || || || || || ||||| ||||| ||||||||
Sbjct 255789 ACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 255838
>seq14
Length=2855554
Score = 86.0 bits (94), Expect = 6e-12
Identities = 161/233 (69%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| ||||| || || | || || || || || ||| ||||||||||| || || |
Sbjct 999800 CGCCACCGCGCAGGCGGAGGACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCG 999741
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
| || ||| | || || || || || || || || |||| | |||||| || | |
Sbjct 999740 CCAAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAG 999681
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGAC 41809
||| | |||||||| | ||| | ||||| | ||| | | | ||||| |||
Sbjct 999680 GAATCCCCTCCTTGT-CTTGAATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCT---T 999625
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||||| ||| ||||| || || ||||| ||||| || || ||||||||
Sbjct 999624 TCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462297920702400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |