Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq21 105 6e-18 seq124 102 8e-17 seq15 91.5 1e-13 seq14 86.0 6e-12 >seq21 Length=2013095 Score = 105 bits (116), Expect = 6e-18 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| |||| || ||||||||| ||||||||||||| || || | Sbjct 1809673 AGACGAAGCACCAAGTGCAAGGTAGACTCCTTCTGGATGTTATAGTCGGCCAGAGTCCTA 1809614 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| |||||||| ||||| | ||| ||||| | || | | ||| Sbjct 1809613 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCT 1809554 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTCCACCTCCAC 41820 |||| | || | || || | || | | | ||||| ||| ||| ||||||| Sbjct 1809553 TTGT-CTTGGATCTTAGCCTTTACATTGTCTATGGTGTC---CGAACTCTCAACCTCCAG 1809498 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || |||| |||||| |||||||||||||| Sbjct 1809497 GGTAATGGTTTTCCCGGTCAACGTCTTGACGAAAATCTGCAT 1809456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || || ||||| || |||||||||||||||||| || | Sbjct 1809454 CCACCACGAAGACGCAAGACAAGGTGCAGGGTCGACTCCTTCTGAATGTTATAATCAGCA 1809395 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || ||||| ||||| || || || | |||||||||| ||| Sbjct 1809394 AGGGTGCGACCGTCCTCCAGTTGCTTCCCGGCAAAGATTAGTCTTTGTTGGTCCGGGGGG 1809335 Query 41756 ACGCTCTCCTT 41766 | || |||||| Sbjct 1809334 ATGCCCTCCTT 1809324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| |||||||||||| || || || | | Sbjct 1809910 CCACCACGGAGACGCAGGACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCG 1809851 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || |||||||| || ||||| ||||| | || || |||| ||| Sbjct 1809850 AGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAAATCAGCCTTTGCTGATCCGGAGGA 1809791 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| |||| |||| || | | | |||||| |||||| Sbjct 1809790 ATACCCTCCTTGTCC-TGAATTTTGGCTTTCACATTGTCAATGGTGTCGGAGCTCTCCAC 1809732 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| || || || || || ||||| Sbjct 1809731 CTCCAGAGTGATGGTCTTCCCAGTCAAGGTTTTCACAAAGATTTGCAT 1809684 >seq124 Length=632428 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||| ||| | ||||| || |||||| ||| || || ||||| || |||| Sbjct 447695 CCACCGCGTAAACGGAGCACCAAGTGGAGCGTGGACTCTTTTTGTATGTTGTAATCGGCC 447754 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| || ||||| || || | ||| ||||||| ||| Sbjct 447755 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATTAGCCTCTGCTGGTCCGGTGGA 447814 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| |||| || | || | | | ||| || || || Sbjct 447815 ATTCCTTCCTTGTCC-TGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAAC 447873 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || ||||| || || || || || || || |||||||| Sbjct 447874 CTCAAGGGTAATTGTTTTGCCGGTGAGAGTTTTCACAAATATCTGCAT 447921 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| ||||| || || |||||| |||||||| || |||| Sbjct 447239 CCACCGCGAAGACGGAGCACTAGATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCA 447298 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||| ||||| || || | || ||||| | || Sbjct 447299 AGAGTCCGTCCATCTTCAAGCTGCTTGCCTGCGAAAATTAGCCTTTGCTGGTCTGGAGGG 447358 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| | || |||| || | | | |||||| || || Sbjct 447359 ATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTGTCAATTGTGTCGGAGCTTTCAAC 447417 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || ||||| ||||| || |||||||| ||||| Sbjct 447418 CTCCAATGTGATAGTCTTTCCCGTGAGCGTTTTGACGAAAATTTGCAT 447465 >seq15 Length=2492501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| || || | Sbjct 255612 CCACCTCGGAGACGAAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCC 255671 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | | || || |||||||| || || || |||| | ||| ||||| | ||| Sbjct 255672 AGAGTCCTCCCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 255731 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | |||||||||| ||| | || || | ||| | || | || || || |||| Sbjct 255732 ATTCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCA-ATCGTATCT-GAGCTCTCC 255788 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 255789 ACCTCCAAGGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 255838 >seq14 Length=2855554 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | || || || || || ||| ||||||||||| || || | Sbjct 999800 CGCCACCGCGCAGGCGGAGGACGAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCG 999741 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | || ||| | || || || || || || || || |||| | |||||| || | | Sbjct 999740 CCAAAGTTCGCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGTTGATCTGGAG 999681 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGAC 41809 ||| | |||||||| | ||| | ||||| | ||| | | | ||||| ||| Sbjct 999680 GAATCCCCTCCTTGT-CTTGAATCTTTGCCTTCACGTTGTCGATTGTGTCCGAGCT---T 999625 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||||| ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 999624 TCGACCTCCAACGTGATCGTCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 999572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462297920702400