Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11707 102 1e-16 seq4704 95.1 1e-14 >seq11707 Length=330502 Score = 102 bits (112), Expect = 1e-16 Identities = 376/581 (65%), Gaps = 10/581 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||||||||| || |||||||||| || | |||||||| || |||||| Sbjct 116542 CAGGCGAAATCGCAGTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGT 116483 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||||| || ||||| || ||||| || |||| | || || ||| || ||||| Sbjct 116482 CCCGGCATTAACCCCCGCTTCTTGAGCCAGAAAATGG-CACAGAAGCTTCCGGAGAAGAA 116424 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--AC-CGGCGCTGTCATG 24310 || || || || || ||||| || | | || || | || ||| | ||| Sbjct 116423 GATCCCCTCGACGCAAGCGAAGGCGATGATGCGCTCGGCAAAGGACTCGGAAC---CATC 116367 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||| | ||||||||| | ||||| | || || || || | Sbjct 116366 GATCCAGCGGAGGGCCCACTGGGCCTTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTG 116307 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||||| | | || ||| ||| || | || | || | | || || ||||| Sbjct 116306 GAAGAGGCGGGTCTTCTCAGCGGAATCCTTGATGTAAGACTCCAGAAGGAGGCTGTACAT 116247 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || || || ||||| || ||||| || || || || ||||| | ||||| | | Sbjct 116246 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCCGCGAC 116187 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||| || ||| | || | | |||| | ||| || || || ||||| ||| || Sbjct 116186 CTGGACCTCTTTCATGAACCTTCCTGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGC 116127 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-T 24609 ||| || || | || || | || || | || ||||| || ||||| ||| || | Sbjct 116126 AAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTTAG-GGCTTCGAATT 116068 Query 24610 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 || || | || | ||| || || || | ||||| || || || || ||||| | Sbjct 116067 GGAGGACGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCCGCCTTCT 116008 Query 24670 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 | ||||| | |||||| || | || || ||||| || ||| Sbjct 116007 TGTACATCTCCCAGATCTCCGGGTACTGGATTGGGAACATA 115967 >seq4704 Length=219207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| |||||||| | || | |||||||| ||| |||| | | |||||||| ||| || Sbjct 5925 TCCCCCCTGATCAACATAACGAGCGGTGTCATTGAAAACCCGTAGCATTGGAACAATTCC 5866 Query 54244 ATTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 54302 ||| |||| ||||| || ||| || ||||| || || ||||||||||||| || | Sbjct 5865 ATTAGATGTCCCATTTGTTCCCCGA-ATATAACTCCCTGTGGCACGAATATTGTGAACCG 5807 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 | | ||| || || || || ||| ||| | || || || || || ||||| | Sbjct 5806 AGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAGGTGTCATATA 5747 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 |||| || || |||||||| ||||| | || || |||||| Sbjct 5746 TGCCTTCAATGCTATCATCTTTCATGCACAACAGGAAGCAGCTA 5703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593489299002480