Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11707 138 1e-27 seq4704 100 4e-16 >seq11707 Length=330502 Score = 138 bits (152), Expect = 1e-27 Identities = 382/580 (66%), Gaps = 8/580 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||||||||||||||| |||||||||| || | ||||| || || |||||| Sbjct 116542 CAGGCGAAATCGCAGTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGT 116483 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||| || ||||| || ||||| || |||| | ||| |||||| |||||| Sbjct 116482 CCCGGCATTAACCCCCGCTTCTTGAGCCAGAAAATGGCACAGAAGCTTCCGGAGAAGAAG 116423 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATGT 33758 || || || || ||| ||||| || | | ||| || | || ||| | ||| Sbjct 116422 ATCCCCTCGACGCAAGCGAAGGCGATGATGCGCTCGGCAAAGGACTCGGAAC---CATCG 116366 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| | ||||||||| | ||||| | || || || || | Sbjct 116365 ATCCAGCGGAGGGCCCACTGGGCCTTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTGG 116306 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| | | || ||| ||| || | |||| || | | || || ||||| Sbjct 116305 AAGAGGCGGGTCTTCTCAGCGGAATCCTTGATGTAAGACTCCAGAAGGAGGCTGTACATC 116246 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || ||||| ||||| || || ||||| | ||||| | | | Sbjct 116245 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCCGCGACC 116186 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || ||| | || | | |||| | ||| || || || || || ||| ||| Sbjct 116185 TGGACCTCTTTCATGAACCTTCCTGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGCA 116126 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TC 34057 || || || | || || | || || | || ||||| || ||||| ||| || | Sbjct 116125 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTTAG-GGCTTCGAATTG 116067 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 || || | || | ||| || || || | ||||| || || || || ||||| || Sbjct 116066 GAGGACGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCCGCCTTCTT 116007 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 ||||| | |||||| || | || ||||||||||| ||| Sbjct 116006 GTACATCTCCCAGATCTCCGGGTACTGGATTGGGAACATA 115967 >seq4704 Length=219207 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 ||| |||||||| | || | |||||||| ||| |||| | | |||||||| ||| || Sbjct 5925 TCCCCCCTGATCAACATAACGAGCGGTGTCATTGAAAACCCGTAGCATTGGAACAATTCC 5866 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || ||||| | || ||||||||||||| || || Sbjct 5865 ATTAGATGTCCCATTTGTTCCCCGAATATAACTCCCTGTGGCACGAATATTGTGAACCGA 5806 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || ||| ||| | || || || || |||||||| || Sbjct 5805 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAGGTGTCATATAT 5746 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 |||||| ||||||||||| ||||| | || || |||||| Sbjct 5745 GCCTTCAATGCTATCATCTTTCATGCACAACAGGAAGCAGCTA 5703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629571175991280