Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10231 109 5e-19 seq9707 96.9 3e-15 seq8682 93.3 4e-14 seq6563 89.7 5e-13 >seq10231 Length=688147 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| ||| ||||| || || |||||||| ||| | || | ||| || Sbjct 310322 AACCAGGTGAAGCGTCGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCGTCCTC 310381 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| || || ||||||| || ||||| |||||||| || ||||| ||||| Sbjct 310382 GAGCTGTTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTG 310441 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||| | || ||||||||| | ||| | ||||| Sbjct 310442 GATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCTAGGGTTATAGTCTT 310501 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | ||||| ||||| || ||||| Sbjct 310502 GCCCGTTAGGGTTTTCACGAAGATCTGCAT 310531 >seq9707 Length=1014798 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| ||| | || | ||||||||||||||| || Sbjct 739472 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCGTCTTCGAGCTGTTTTCCG 739413 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || || || || ||||| ||||| ||| || || Sbjct 739412 GCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 739353 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||| | || | ||||||||||| | ||| Sbjct 739352 ACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGTGTT 739293 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 739292 TTCACGAAGATCTGCATA 739275 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | ||| | || | || ||||| || || ||||| || ||| Sbjct 725486 GCCGCCGCGGAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 725427 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||||||||||||| || || |||||||||| ||||| || || || Sbjct 725426 GAGGGTTCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 725367 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| | ||| || Sbjct 725366 AATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 725307 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||||||||| | ||||| ||||| || |||||| Sbjct 725306 CTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATA 725258 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || ||||| || || || ||||||| | ||||||||||||||| || ||||| || Sbjct 739887 GTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCGGGAGGAATTCCTTCCTT 739828 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||||| ||||||||||| || | Sbjct 739827 GTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAACTCTCCACCTCAAGCGTGAT 739768 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||||||| | || || ||||| || |||||| Sbjct 739767 CGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 739731 >seq8682 Length=358022 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||||||||| ||||||| || ||||| || || ||||| || ||| | Sbjct 100627 CCACCACGTAGACGCAAAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 100686 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | |||||||||||||| || ||| |||||| | |||||||| || || Sbjct 100687 AGGGTACGCCCATCTTCGAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 100746 Query 139658 ATGCCTTCTTTGTC 139671 ||||| || ||||| Sbjct 100747 ATGCCCTCCTTGTC 100760 >seq6563 Length=399665 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || ||||| | |||||||||||||| ||||| || || Sbjct 390364 CCGCCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCTTTTTGGATGTTGTAGTCAGCA 390423 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || ||||| |||||| | ||| ||||| || || Sbjct 390424 AGAGTACGGCCGTCCTCAAGCTGCTTTCCAGCGAAGATCAACCTTTGTTGATCCGGGGGG 390483 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| |||||| ||| | | || | ||||| | | ||| ||| Sbjct 390484 ATTCCCTCCTTGTCCTGGATTTTAGCTTTGACGTTGTCAATGGTGTCTGAGCTCTCGACC 390543 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 390544 TCGAGAGTGATGGTCTTTCCGGTGAGGGTTTTCACGAAGATTTGCAT 390590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495869908759200