Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11707 129 8e-25 seq4704 109 8e-19 >seq11707 Length=330502 Score = 129 bits (142), Expect = 8e-25 Identities = 381/580 (66%), Gaps = 8/580 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||||||||||||||| |||||||||| || || |||||||| || |||||| Sbjct 116542 CAGGCGAAATCGCAGTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGT 116483 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||||| || ||||| || ||||| || |||| | || || || || ||||| Sbjct 116482 CCCGGCATTAACCCCCGCTTCTTGAGCCAGAAAATGG-CACAGAAGCTTCCGGAGAAGAA 116424 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGCTGTCATGT 50136 ||| || || || || ||||| | | | ||| || | ||| || ||| Sbjct 116423 GATCCCCTCGACGCAAGCGAAGGCGATGATGCGCTCGGCAAAGGACT--CGGAACCATCG 116366 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||| | ||||||||| | ||||| | || || || || | Sbjct 116365 ATCCAGCGGAGGGCCCACTGGGCCTTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTGG 116306 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| | | || ||| ||| || | |||| || | | || || ||||| Sbjct 116305 AAGAGGCGGGTCTTCTCAGCGGAATCCTTGATGTAAGACTCCAGAAGGAGGCTGTACATC 116246 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || ||||| ||||| || || ||||| | ||||| | | | Sbjct 116245 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCCGCGACC 116186 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || ||| | || | | | || | ||| || || || ||||| ||| ||| Sbjct 116185 TGGACCTCTTTCATGAACCTTCCTGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGCA 116126 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA-TC 50435 || || || | || || | || || || || |||| ||| ||||| ||| || | Sbjct 116125 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTTAG-GGCTTCGAATTG 116067 Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 || || | || | ||| || || || | ||||| || || || || ||||| || Sbjct 116066 GAGGACGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCCGCCTTCTT 116007 Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||||| | |||||| || | || ||||||||||| ||| Sbjct 116006 GTACATCTCCCAGATCTCCGGGTACTGGATTGGGAACATA 115967 >seq4704 Length=219207 Score = 109 bits (120), Expect = 8e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| |||||||| | || | |||||||| ||| |||| | | |||||||| ||| || Sbjct 5925 TCCCCCCTGATCAACATAACGAGCGGTGTCATTGAAAACCCGTAGCATTGGAACAATTCC 5866 Query 80154 ATTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 80212 ||| ||||| ||||| || ||| || ||||| || || ||||||||||||| || | Sbjct 5865 ATTAGATGTCCCATTTGTTCCCCGA-ATATAACTCCCTGTGGCACGAATATTGTGAACCG 5807 Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 | | ||| ||||| || || ||| ||| | || || || || || ||||| | Sbjct 5806 AGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAGGTGTCATATA 5747 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 |||| || ||||||||||| ||||| | || || |||||| Sbjct 5746 TGCCTTCAATGCTATCATCTTTCATGCACAACAGGAAGCAGCTA 5703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717987768353640