Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq9707 111 1e-19 seq8682 91.5 1e-13 >seq9707 Length=1014798 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || | ||||| ||||| || |||||| || | ||||||||||| Sbjct 739730 CCGCCGCGAAGCCTGAGCACCAGATGGAGCGTTGACTCCTTCTGGATATTGTAATCGGCT 739671 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| ||||| || |||||||| || |||| | ||| ||||| | ||| Sbjct 739670 AGGGTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGCGGA 739611 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| ||||||| || | | |||||| ||| |||||| Sbjct 739610 ATTCCTTCCTTATCCTGGATCTTGGCTTTGACGTTGTCGATCGTGTCG-GAGCTCTCGAC 739552 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||||| || ||||| || ||||| || || || ||||| Sbjct 739551 TTCTAGGGTTATAGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 739504 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||||| ||||| |||||||||||| || | |||||| |||| Sbjct 740414 CCTCCACGAAGACGAAGCACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCG 740355 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | || || ||||| || |||| ||||| || || | || Sbjct 740354 AGGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 740295 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | || || || | | ||||| | ||| |||||| Sbjct 740294 ATCCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTC-CGAGCTCTCGAC 740236 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || ||||||||||| || ||||| Sbjct 740235 CTCGAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 740188 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | |||| ||||| |||||||||||| || | ||||||||||| Sbjct 739958 CCTCCGCGAAGACGAAGGACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAATCGGCG 739899 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| |||| || || ||||| || |||| | || ||||||| || Sbjct 739898 AGGGTACGACCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCGGGAGGA 739839 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || | | |||||| | ||| || Sbjct 739838 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAACTCTCCACC 739779 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || || || ||||| || || || || || || ||||| Sbjct 739778 TCAAGCGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 739732 >seq8682 Length=358022 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| |||| || |||||| || | ||||| |||| | Sbjct 100855 CCACCACGGAGACGCAAAACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCC 100914 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || || | |||||||||||||| ||||| | ||| || || | || Sbjct 100915 AGGGTACGTCCATCCTCGAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 100974 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| ||| |||| || | ||| |||||| | || || Sbjct 100975 ATTCCCTCCTTGTC-CTGAATCTTGGCTTTCACATTATCAATGGTGTCGGAACTTTCAAC 101033 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||||||||| || || || ||||| ||||||||| Sbjct 101034 CTCCAAGGTGATGGTTTTTCCGGTGAGGGTCTTAACAAAGATTTGCATT 101082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381224114767458