Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8682 96.9 3e-15 >seq8682 Length=358022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| |||||||| || ||||| |||||||||||| || ||| |||| || Sbjct 101329 ACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCAAGGGTTCGGCCGTCCTCG 101388 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | |||| | || ||||| ||| || || || ||||| | Sbjct 101389 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGA 101448 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| | || ||||| || |||| || || | ||| ||||| || Sbjct 101449 ATCTTAGCT-TTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTT 101507 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| ||||| || ||||| Sbjct 101508 GCCAGTGAGAGTTTTCACAAAGATCTGCAT 101537 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||||||| || ||| ||||||| Sbjct 101101 ACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGCAAGGGTTCGACCGTCTTCA 101160 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | |||| | || ||||| || || || || || || | Sbjct 101161 AGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCTTGA 101220 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||||| | || ||||| || | || || || | |||||||||||| Sbjct 101221 ATCTTGGCCTTTACGTTATCAATGGTGTCAGAGCTCTCAACCTCAAGGGTAATGGTTTTC 101280 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || |||||| Sbjct 101281 CCAGTGAGGGTCTTGACGAAGATCTGCATA 101310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || || || |||||||| || || | || |||| || Sbjct 100417 ACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCCTCG 100476 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | ||||| | || ||||| ||||| || || ||||| | Sbjct 100477 AGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 100536 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || || || || ||||||| || ||||||||||| || Sbjct 100537 ATTTTGGCCTTAACATTGTCGATTGTGTCCGAGCTTTCTACCTCCAAGGTAATGGTCTTG 100596 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||||||||| Sbjct 100597 CCAGTGAGTGTCTTCACAAAAATTTGCAT 100625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362041035539241