Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq8682 98.7 8e-16 >seq8682 Length=358022 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| ||||| | || || ||||||| Sbjct 100416 CACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTCCTGCCGTCCTC 100475 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||||||| | || | |||||||| ||| ||| | |||||| ||||| Sbjct 100476 GAGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 100535 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT-TCGACGGTAATGGTTT 19010 |||||| || || | | ||| || || | || | | || | ||||||||| | Sbjct 100536 AATTTTGGCCTTAACATTGTCGATTGTGTC-CGAGCTTTCTACCTCCAAGGTAATGGTCT 100594 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || | || || |||||||||||||| Sbjct 100595 TGCCAGTGAGTGTCTTCACAAAAATTTGCAT 100625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || |||||||||||||| |||||||| || | ||| | ||||||| Sbjct 101328 CACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCAAGGGTTCGGCCGTCCTC 101387 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || |||||||| ||| || | ||||| ||||| Sbjct 101388 GAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTG 101447 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 ||| || ||| || | ||| || | ||| || ||| |||| ||| ||||| Sbjct 101448 AATCTTAGCTTTGACATTATCGATGGT---GTCAGAGCTTTCCACCTCGAGGGTGATGGT 101504 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || | |||||| ||||| || ||||| Sbjct 101505 CTTGCCAGTGAGAGTTTTCACAAAGATCTGCAT 101537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414414648379594