Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6563 127 5e-24 seq8682 109 1e-18 seq9707 102 2e-16 seq3222 102 2e-16 >seq6563 Length=399665 Score = 127 bits (140), Expect = 5e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | || || || || | || ||||| ||||| || || || || Sbjct 389221 ATTCCACCCCTCAGACGCAGCACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCT 389280 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || ||||| ||||| ||||| || || || ||||| |||||||| ||||| || Sbjct 389281 GCGAGGGTCCTACCATCTTCGAGTTGCTTCCCGGCGAAAATCAGCCTCTGCTGATCTGGG 389340 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || || ||||||||||| || ||||| || | || || | || | || Sbjct 389341 GGAATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATTGTGTC-CGAGCTCTC 389399 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| || ||||| || || || || ||||||||| Sbjct 389400 CACTTCGAGGGTGATGGTCTTCCCTGTAAGGGTCTTAACGAAAATCTGCATT 389451 Score = 118 bits (130), Expect = 2e-21 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || ||||||| || || || || || || || || || || Sbjct 389710 GTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCAAGCTGCTTCCCC 389769 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || || || || |||||||||||||| || ||| Sbjct 389770 GCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTATCCTGAATCTTGGCCTTT 389829 Query 104483 ACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||| || | || || ||| ||| || || || || || ||||| || ||||| Sbjct 389830 ACATTGTCAATCGTGTCAGAGCT---TTCGACTTCCAGGGTGATGGTCTTTCCCGTAAGG 389886 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| |||||||| Sbjct 389887 GTCTTAACAAAAATCTGCAT 389906 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || || || | || || || || ||||| || || ||| Sbjct 389449 ATTCCACCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAATCA 389508 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || ||||| || || || || || || || ||||| |||||||| || || || Sbjct 389509 GCAAGGGTCCTACCATCCTCAAGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCTGGT 389568 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || || ||||||||||| || ||||| || | || || || | || Sbjct 389569 GGGATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATCGTGTC-TGAGCTCTC 389627 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| || ||||| || || ||||| ||||||||| Sbjct 389628 CACTTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAAATCTGCATT 389679 Score = 113 bits (124), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || |||| | ||| || || || || || || || || Sbjct 389026 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCGTCCAGCTGCTTCCCT 389085 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || || || || ||||||||||| || || Sbjct 389086 GCAAAGATCAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTG 389145 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || | || | || ||||| | || || ||||| ||||| | || Sbjct 389146 ACATTATCAATAGTGTC-CGAGCTCTCGACCTCCAAAGTGATGGTCTTCCCAGTCAAGGT 389204 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 389205 CTTGACAAAGATCTGCATT 389223 >seq8682 Length=358022 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | || || || || ||||| || Sbjct 100885 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGTCCATCCTCGAGCTGTTTGCCG 100944 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || || || ||||| || || ||||||||||| ||||| Sbjct 100945 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCTTTC 101004 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | ||| ||||| | || || || || || || || || Sbjct 101005 ACATTATCAATGGTGTCGGAACTTTCAACCTCCAAGGTGATGGTTTTTCCGGTGAGGGTC 101064 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 101065 TTAACAAAGATTTGCATT 101082 >seq9707 Length=1014798 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||||||||| || |||| ||||| | ||| || || | || || || Sbjct 740612 GTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTGCGACCATCCTCCAACTGCTTCCCT 740553 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||||||||| || || Sbjct 740552 GCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTC 740493 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||| || | || ||||| || || || ||||| || || || || Sbjct 740492 ACGTTGTCGATCGTATC-AGAGCTCTCAACCTCGAGGGTGATCGTCTTGCCGGTGAGGGT 740434 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 740433 CTTGACGAAGATCTGCAT 740416 >seq3222 Length=516221 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | ||||| | || ||||| | ||| || || || || || || || |||| Sbjct 55191 TTCCACCCCGAAGCCTCAAAACCAGATGAAGTGTTGACTCCTTTTGGATGTTGTAATCAG 55250 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||| || || ||||| | ||| || ||||||||||| | ||||| |||||||| | Sbjct 55251 CAAGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCAGGCG 55310 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | |||||||| |||||||||| Sbjct 55311 GGATTCCTTCCTTATCCTGAA 55331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150936638508108