Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1347 114 7e-21 seq1702 111 8e-20 seq5362 109 3e-19 seq4581 109 3e-19 seq9258 105 3e-18 seq31300 102 4e-17 seq3164 100 1e-16 seq3461 98.7 5e-16 seq5707 89.7 3e-13 seq9829 87.8 9e-13 >seq1347 Length=528287 Score = 114 bits (126), Expect = 7e-21 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||||| |||||||| | | |||||||| ||||||||||||||||||||| || Sbjct 419956 AAAAAACCAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACCAC 420014 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGATTTT 11547 ||||| ||||||||||||||| |||| ||| |||||| ||| Sbjct 420015 GCTCTAACCAACTGAGCTAATAGGCCAGTGACATTTGTGAATTT 420058 >seq1702 Length=719121 Score = 111 bits (122), Expect = 8e-20 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 474220 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 474161 Query 11515 CTGAGCTAATGGGCCGTCGACGA 11537 |||||||||| |||||| || || Sbjct 474160 CTGAGCTAATAGGCCGTTGATGA 474138 >seq5362 Length=816700 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 65433 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 65374 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 65373 AACTGAGCTAATAGGCC 65357 >seq4581 Length=962281 Score = 109 bits (120), Expect = 3e-19 Identities = 83/97 (86%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 11440 TAATAAAAAA--TCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||||||| | ||| |||||||||| | | |||||||| ||||||||||||||| Sbjct 114044 TAATAAAAAAGGTAAAAAGTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 113985 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||| |||||| ||||||||||||||| |||||| Sbjct 113984 TAGCACGGCGCTCTAACCAACTGAGCTAATAGGCCGT 113948 >seq9258 Length=163788 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| ||| Sbjct 50007 AAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACCACGCTCTAACC 49948 Query 11513 AACTGAGCTAATGGGCCGTCGACGATT 11539 |||||||||||| |||| ||||||| Sbjct 49947 AACTGAGCTAATAGGCCAGTGACGATT 49921 >seq31300 Length=1457403 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||| ||||||||| |||||| Sbjct 817010 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCCCGACGCTCTAACCAAC 816951 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 816950 TGAGCTAATAGGCCG 816936 >seq3164 Length=613270 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||| ||||||||| |||||| Sbjct 99437 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCCCGACGCTCTAACCAAC 99496 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 99497 TGAGCTAATAGGCC 99510 >seq3461 Length=841474 Score = 98.7 bits (108), Expect = 5e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||| | | | ||||||| ||||||||||||||||||||| |||||||| |||| Sbjct 615419 ATTGGCCCACGCAGGTCTCGAACCCTCGACCTTCGCGTTATTAGCAAGACGCTCTAACCA 615478 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 615479 ACTGAGCTAATAGGCC 615494 >seq5707 Length=591742 Score = 89.7 bits (98), Expect = 3e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||| ||||||| |||||| Sbjct 336087 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC---ACGCTCTAACCAAC 336031 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 336030 TGAGCTAATAGGCC 336017 >seq9829 Length=1872738 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||| |||| Sbjct 1851538 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG---AAACCA 1851594 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 1851595 ACTGAGCTAATAGGCC 1851610 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261391446091876