Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3647 145 1e-30 seq3205 116 6e-22 seq3139 93.3 7e-15 >seq3647 Length=396674 Score = 145 bits (160), Expect = 1e-30 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || || || | ||||| Sbjct 273499 CTCCGTGACAACATCCAGGGGATCACGAAGCCGGCGATCCGACGGCTTGCGAGGCGTGGC 273558 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||||||||| || || || |||| || |||| ||| | || | ||||||||| Sbjct 273559 GGAGTCAAGCGAATCAGCGGTCTGATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 273618 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| |||||||||||| || ||||| || Sbjct 273619 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTG 273678 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| |||||||||| | || || || ||||||| | || || || ||| Sbjct 273679 ACCGCCATGGACGTCGTCTATGCTCTAAAGCGCCAGGGCCGTACTCTCTACGGCTTCGGA 273738 Query 16694 AGTTAATC 16701 ||| ||| Sbjct 273739 GGTTGATC 273746 Score = 143 bits (158), Expect = 4e-30 Identities = 180/247 (73%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || ||||| || ||||| | ||||| Sbjct 297825 CTCCGCGACAACATCCAGGGGATAACGAAGCCGGCGATCCGACGGCTGGCGAGGCGTGGC 297884 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||||||||| || || || |||| || |||| ||| | ||| | |||| |||| Sbjct 297885 GGAGTCAAGCGAATCAGCGGTCTGATCTACGAGGAGACTCGCGGTGTCCTCAAGAGCTTC 297944 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| |||||||||||| || ||||| || Sbjct 297945 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTG 298004 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| |||||||||| | || || || ||||||| | || || || ||| Sbjct 298005 ACCGCCATGGACGTCGTCTATGCTCTCAAGCGCCAGGGCCGTACTCTCTACGGCTTCGGA 298064 Query 16694 AGTTAAT 16700 ||| || Sbjct 298065 GGTTGAT 298071 Score = 131 bits (144), Expect = 3e-26 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || ||||| || ||||| | || || Sbjct 301209 CTCCGCGACAACATCCAGGGGATAACGAAGCCGGCGATCCGACGGCTGGCGAGGCGGGGC 301268 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||||||||| || || || |||| || |||| ||| | || | |||| |||| Sbjct 301269 GGAGTCAAGCGAATCAGCGGCCTGATCTACGAGGAGACTCGCGGTGGCCTCAAGAGCTTC 301328 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| |||||||||||| || ||||| || Sbjct 301329 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTG 301388 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| |||||||||| | || || || || |||| | || || || ||| Sbjct 301389 ACCGCCATGGACGTCGTCTATGCTCTCAAGCGCCAGGGTCGTACTCTCTACGGCTTCGGA 301448 Query 16694 AGTTAAT 16700 ||| || Sbjct 301449 GGTTGAT 301455 >seq3205 Length=233463 Score = 116 bits (128), Expect = 6e-22 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||| ||||| || || || ||||| ||||| | || || | Sbjct 166915 GAGACAACATCCAGGGCATCACGAAGCCGGCGATTCGCCGTCTTGCTCGCAGAGGCGGTG 166974 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||| || |||| | | | ||| | ||||||||| | Sbjct 166975 TGAAGCGTATCAGCGGACTGATCTACGAGGAGACTAGAGGAGTTCTCAAGATCTTCTTGG 167034 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || || || ||| ||||||||||| | | ||||| ||||| Sbjct 167035 AGAACGTGATCCGCGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACCGTCACTG 167094 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| |||| || || | || | || ||| | | | || ||||| ||| ||| Sbjct 167095 CCATGGACGTCGTTTACGCTCTCAAGAGGCAGGGCAGGACTCTCTACGGTTTCGGAGGTT 167154 Query 16698 AA 16699 || Sbjct 167155 AA 167156 >seq3139 Length=64809 Score = 93.3 bits (102), Expect = 7e-15 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||| ||||| || || || ||||| ||||| | || || | Sbjct 33684 GAGACAACATCCAGGGCATCACGAAGCCGGCGATTCGCCGTCTTGCTCGCAGAGGCGGTG 33625 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || || |||| || |||| | | || | || |||||| | Sbjct 33624 TGAAGCGTATCAGCGGTCTGATCTACGAGGAGACCAGAGGAGTGCTCAAAATCTTCTTGG 33565 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| || || || ||| ||||||||||| | | ||||| |||||| Sbjct 33564 AGAACGTGATCCGCGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACCGTCACCG 33505 Query 16638 CCATGGATATCGTCTATGC 16656 | ||||| |||| || || Sbjct 33504 CGATGGACGTCGTTTACGC 33486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79046581276593