Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11707 141 1e-28 seq4704 96.9 4e-15 >seq11707 Length=330502 Score = 141 bits (156), Expect = 1e-28 Identities = 385/581 (66%), Gaps = 10/581 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||||||||||||||| |||||||||| || || |||||||| || |||||| Sbjct 116542 CAGGCGAAATCGCAGTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGT 116483 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| || ||||| || ||||| || |||| | ||| ||| || |||||| Sbjct 116482 CCCGGCATTAACCCCCGCTTCTTGAGCCAGAAAATGGCACAGAAGCTTCCGGAGAAGAAG 116423 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATGT 33480 || || || || ||| ||||| || | | ||| || | || ||| | ||| Sbjct 116422 ATCCCCTCGACGCAAGCGAAGGCGATGATGCGCTCGGCAAAGGACTCGGAAC---CATCG 116366 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||| | ||||||||| | ||||| | || || || || | Sbjct 116365 ATCCAGCGGAGGGCCCACTGGGCCTTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTGG 116306 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| | | || ||| ||| || | |||| || | | || || ||||| Sbjct 116305 AAGAGGCGGGTCTTCTCAGCGGAATCCTTGATGTAAGACTCCAGAAGGAGGCTGTACATC 116246 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || ||||| ||||| || || ||||| | ||||| | | | Sbjct 116245 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCCGCGACC 116186 Query 33661 TGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || || ||| | || | | |||| || | ||| || || || ||||| ||| || Sbjct 116185 TGGACCTCT-TTCATGAACCTTCCTGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGC 116127 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-T 33778 ||| || || | || || | || || | || ||||| || ||||| ||| || | Sbjct 116126 AAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTTAG-GGCTTCGAATT 116068 Query 33779 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33838 || || | || | ||| || || || | ||||| || || || || ||||| | Sbjct 116067 GGAGGACGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCCGCCTTCT 116008 Query 33839 TATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 | ||||| | |||||| || || ||||||||||| ||| Sbjct 116007 TGTACATCTCCCAGATCTCCGGGTACTGGATTGGGAACATA 115967 >seq4704 Length=219207 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| |||||||| | || | |||||||| ||| |||| | | |||||||| ||| || Sbjct 5925 TCCCCCCTGATCAACATAACGAGCGGTGTCATTGAAAACCCGTAGCATTGGAACAATTCC 5866 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || ||||| || || ||||||||||||| || || Sbjct 5865 ATTAGATGTCCCATTTGTTCCCCGAATATAACTCCCTGTGGCACGAATATTGTGAACCGA 5806 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || ||| ||| | || || || || |||||||| || Sbjct 5805 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAGGTGTCATATAT 5746 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || ||||||||||| ||||| | || || |||||| Sbjct 5745 GCCTTCAATGCTATCATCTTTCATGCACAACAGGAAGCAGCTA 5703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622703464121160