Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq8682 109 5e-19 seq6563 102 7e-17 seq10231 96.9 3e-15 seq9707 96.9 3e-15 >seq8682 Length=358022 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| |||| || || | Sbjct 101537 ATGCAGATCTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 101478 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| || || || || || || || Sbjct 101477 GACACCATCGATAATGTCAAAGCTAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAG 101418 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||||||||| ||||| || | | ||| | | |||||| ||| Sbjct 101417 CAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTTGCCGATTACAAC 101358 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || | ||||| ||| Sbjct 101357 ATTCAAAAGGAGTCCACCCTCCATTTGGTG 101328 >seq6563 Length=399665 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| ||||||| ||| | Sbjct 389451 AATGCAGATTTTCGTTAAGACCCTTACAGGGAAGACCATCACCCTCGAAGTGGAGAGCTC 389392 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || ||||||| ||||| || ||||| || || ||||| Sbjct 389391 GGACACAATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCAGATCA 389332 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||||| || ||| |||||||||||||||| || | | || ||||| || Sbjct 389331 GCAGAGGCTGATTTTCGCCGGGAAGCAACTCGAAGATGGTAGGACCCTCGCAGATTACAA 389272 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || ||||| || |||| Sbjct 389271 CATCCAGAAGGAATCAACCCTTCA 389248 >seq10231 Length=688147 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 23982 CCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGT 24040 |||| ||| ||||| | || || ||||| |||| || || | || ||| | || || Sbjct 310541 CCAACCAACCATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACTATAACCCTAGAGGT 310482 Query 24041 CGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACC 24100 ||| || ||||||||||| | ||||| ||||| ||||| ||||| || || Sbjct 310481 GGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCC 310422 Query 24101 TCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG 24160 |||||| || ||| | ||||| | || ||| || || ||||| || | | ||| | || Sbjct 310421 TCCCGACCAGCAGCGCCTGATCTTCGCCGGAAAACAGCTCGAGGACGGCCGAACCCTCGC 310362 Query 24161 CGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||| || || || || || |||| | || | || | ||||||||| Sbjct 310361 CGACTATAACATCCAGAAGGAGTCGACGCTTCACCTGGTTCTCAGGCTCAGAGGAGGA 310304 >seq9707 Length=1014798 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || |||||| |||| || || | || || |||| |||||| | Sbjct 739273 AATATGCAGATCTTCGTGAAAACACTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGC 739332 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 739333 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCGGAC 739392 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| || || |||||||| | | ||| | || ||| ||| Sbjct 739393 CAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGAACCCTCGCCGACTAT 739452 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || || | ||| | ||| Sbjct 739453 AACATCCAGAAGGAGTCCACTCTCCATCTGGTG 739485 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || || |||| |||||| | Sbjct 725256 AATATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGC 725315 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| || || || || || || Sbjct 725316 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 725375 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| || || |||||||| | | ||| | || ||| || Sbjct 725376 CAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGAACCCTCGCCGACTAC 725435 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 725436 AACATCCAGAAGGAGTCCAC 725455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429771987611655