Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq8682 102 7e-17 seq6563 100 2e-16 seq9707 98.7 8e-16 seq6147 87.8 1e-12 >seq8682 Length=358022 Score = 102 bits (112), Expect = 7e-17 Identities = 150/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||| |||| ||| | ||||||| | || Sbjct 100195 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCGTCCTCGAGCTGC 100254 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || |||| ||| ||||| || | |||||| ||||| || ||| Sbjct 100255 TTACCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTT 100314 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG-TTTCCACGGTGATGGTTTTTCC 16908 || |||||| | | | | |||| ||| |||| || |||| |||||| || || || Sbjct 100315 GC--CTTCACATTGTCAATGGTGT--CCGAGCTCTCGACCTCCAAGGTGATCGTCTTCCC 100370 Query 16909 GGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || || |||||||||||||| Sbjct 100371 GGTAAGGGTCTTCACAAAAATCTGCAT 100397 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || || |||||||| || ||||||||||| || Sbjct 100399 CCACCACGCAGACGCAGCACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCA 100458 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | || || |||||| | || | || ||| |||||| || Sbjct 100459 AGGGTCCTGCCGTCCTCGAGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCCGGGGGA 100518 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TCCG 16886 | |||||| ||||| ||||| ||| || | | | | |||| ||| || || Sbjct 100519 ATGCCCTCCTTGTCCTGAATTTTGGCCTTAACATTGTCGATTGTGT--CCGAGCTTTCTA 100576 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| || || || || || || |||||||| ||||| Sbjct 100577 CCTCCAAGGTAATGGTCTTGCCAGTGAGTGTCTTCACAAAAATTTGCAT 100625 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || |||||||||||||| |||||||| ||||| | |||| | ||||| Sbjct 101326 AGCACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCAAGGGTTCGGCCGTCC 101385 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || |||| ||| |||||| || | ||||| ||||| Sbjct 101386 TCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCT 101445 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | ||||| | ||| || | |||||||| Sbjct 101446 TGAATCTTAGCT--TTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGG 101503 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || ||||| ||||| |||||||| Sbjct 101504 TCTTGCCAGTGAGAGTTTTCACAAAGATCTGCAT 101537 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || ||||| | || |||| || || || |||||||| || |||||||||||||| Sbjct 100626 CCCACCACGTAGACGCAAAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 100685 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || || | |||||||| ||| | || | || ||| || || || Sbjct 100686 CAGGGTACGCCCATCTTCGAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGG 100745 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| ||| | ||| || | | | | ||||| | || Sbjct 100746 AATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAGCTTTCAAC 100805 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || || || || |||||||||||||| Sbjct 100806 CTCCAATGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAAATCTGCAT 100853 >seq6563 Length=399665 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||| || || | ||| | | ||||| | || Sbjct 389476 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTCCTACCATCCTCAAGCTGC 389535 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || || || |||| |||| ||| ||||| || | |||||| ||||| || ||| Sbjct 389536 TTCCCTGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTT 389595 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||| | |||| ||| | ||||||||| || || | Sbjct 389596 GC--CTTCACATTATCAATCGTGTCTGAGCTCTCCACTTCAAGGGTGATGGTCTTCCCTG 389653 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 | || || |||||||||||||||||| Sbjct 389654 TAAGGGTCTTGACAAAAATCTGCATT 389679 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| ||||||||||| || | ||| | | ||| Sbjct 389695 AGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCC 389754 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || |||||| | || |||| ||| ||||| || | |||||| || || Sbjct 389755 TCAAGCTGCTTCCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTATCC 389814 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | ||||| | || ||||| ||||||||| Sbjct 389815 TGAATCTTGGCCTTTACATTGTCAATCGTGTCAGAGCTTTCGACTTCCAGGGTGATGGTC 389874 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || || |||||||||||||| Sbjct 389875 TTTCCCGTAAGGGTCTTAACAAAAATCTGCAT 389906 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||| || |||| || | | || |||| || Sbjct 389020 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCGTCCAGCTGC 389079 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| ||||| || | |||||| ||||| ||| | | Sbjct 389080 TTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTC 389139 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG-TTTCCACGGTGATGGTTTTTCCGG 16910 ||| || | | | ||||| ||| |||| || |||| |||||||| || || | Sbjct 389140 GCCTTGACATTATCAATAGTGT--CCGAGCTCTCGACCTCCAAAGTGATGGTCTTCCCAG 389197 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 ||| || |||||||| ||||||||| Sbjct 389198 TCAAGGTCTTGACAAAGATCTGCATT 389223 >seq9707 Length=1014798 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||||||||| | |||| | |||| Sbjct 725470 AGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCT 725411 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || ||||| |||||| || | ||||| ||||| Sbjct 725410 TCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCC 725351 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | ||| || | ||||||| Sbjct 725350 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGG 725293 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || ||||| || || |||||||| || Sbjct 725292 TCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 725256 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||| |||||||| | |||| | |||| Sbjct 739487 AGCACCAGATGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCGTCT 739428 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || ||||| |||||| || | || || ||||| Sbjct 739427 TCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCC 739368 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | ||| || | ||||||| Sbjct 739367 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGG 739310 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || ||||| || || |||||||| || Sbjct 739309 TCTTGCCGGTTAGTGTTTTCACGAAGATCTGCATATT 739273 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || |||| ||| || ||| |||||| || || ||||||||||| Sbjct 740415 CCCTCCACGAAGACGAAGCACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGC 740356 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| ||||||| | || || || || | || || ||||| |||||| ||| Sbjct 740355 GAGGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 740296 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC- 16884 | ||||| ||||| || || || ||| || | | | | |||| ||| |||| Sbjct 740295 AATCCCCTCCTTGTCCTGGATCTTGGC--CTTAACGTTGTCGATCGTGT--CCGAGCTCT 740240 Query 16885 CG-TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | |||||| || || ||||| || ||||| ||||| |||||||| Sbjct 740239 CGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 740188 >seq6147 Length=2276951 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||||| | ||| | ||||| Sbjct 1403051 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCC 1402992 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| |||||| || | |||||| ||||| Sbjct 1402991 TCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 1402932 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| || || || | ||| |||| Sbjct 1402931 TGGATCTTGGC--CTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATGG 1402874 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || ||||| || || |||||||| Sbjct 1402873 TCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 1402840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404933466649990