Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5170 127 1e-24 seq9707 93.3 3e-14 seq10231 84.2 1e-11 >seq5170 Length=1600330 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| || |||||||||||||| || |||||||| Sbjct 1138152 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGTAGATAGGGACAGTGGGAATCTCGT 1138093 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 1138092 TAATCCATTCATGCACGTCACTAATTAGATGACGA 1138058 >seq9707 Length=1014798 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||| |||||||||||||| || ||||||||||| | | ||| |||| || Sbjct 739940 ACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAATCGGCGAGGGTACGACCGTCCTCC 739881 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || |||||||| || || || | ||| ||||||| || | ||||| ||||| Sbjct 739880 AGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCGGGAGGAATTCCTTCCTTGTCTTGG 739821 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || |||||| || | || || || ||| || || || | || || || || Sbjct 739820 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAACTCTCCACCTCAAGCGTGATCGTCTTG 739761 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || ||||| |||||||| Sbjct 739760 CCGGTGAGGGTCTTGACGAAGATCTGCAT 739732 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| |||||||||||||||| | | || | || || || || || || ||||| Sbjct 740607 CTCCTTCTGAATATTGTAATCAGCAAGAGTGCGACCATCCTCCAACTGCTTCCCTGCAAA 740548 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || || || || | ||| | ||| || |||||| ||| || |||||| || Sbjct 740547 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 740488 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || ||||| || ||||| || | || || || || || || | ||| || || Sbjct 740487 GTCGATCGTATCAGAGCTCTCAACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGAC 740428 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 740427 GAAGATCTGCAT 740416 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||| |||||||||||||| || ||||| ||||| | | || |||| || | || Sbjct 740163 ATGGAGAGTGCTCTCCTTCTGGATATTATAATCGGCGAGGGTGCGACCGTCCTCGAGCTG 740104 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || ||||| || || || | || || || | |||| ||||| |||||| || || Sbjct 740103 CTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTT 740044 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 |||||| || | || || || ||||||||||||| || | || || || || Sbjct 740043 GGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCAACTTCTAGGGTTACGGTCTTGCCTGT 739984 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 | ||||||||| || |||||||| Sbjct 739983 TAGGGTTTTCACAAAGATCTGCAT 739960 >seq10231 Length=688147 Score = 84.2 bits (92), Expect = 1e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 38161 CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 |||| || | ||||||||||| || || ||||| || || |||| |||| ||||| | Sbjct 310375 CGTCCTCGAGCTGTTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATTCCTTCCT 310434 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 ||||| || || ||| ||||| | || || || || || |||| || | Sbjct 310435 TGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCTAGGGTTA 310494 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || ||||| | |||||||||||| ||||||||| || Sbjct 310495 TAGTCTTGCCCGTTAGGGTTTTCACGAAGATCTGCATGGTT 310535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334819424028131