Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11707 111 2e-19 seq4704 104 3e-17 >seq11707 Length=330502 Score = 111 bits (122), Expect = 2e-19 Identities = 378/581 (65%), Gaps = 10/581 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||||||||| || |||||||||| || | |||||||| || |||||| Sbjct 116542 CAGGCGAAATCGCAGTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGT 116483 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||||| || ||||| || ||||| || |||| | || || ||| || ||||| Sbjct 116482 CCCGGCATTAACCCCCGCTTCTTGAGCCAGAAAATGG-CACAGAAGCTTCCGGAGAAGAA 116424 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATG 32836 || || || || || ||||| || | | ||| || | || ||| | ||| Sbjct 116423 GATCCCCTCGACGCAAGCGAAGGCGATGATGCGCTCGGCAAAGGACTCGGAAC---CATC 116367 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | ||||| | ||||||||| | ||||| | || || || || | Sbjct 116366 GATCCAGCGGAGGGCCCACTGGGCCTTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTG 116307 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||||| | | || ||| ||| || | || | || | | || || ||||| Sbjct 116306 GAAGAGGCGGGTCTTCTCAGCGGAATCCTTGATGTAAGACTCCAGAAGGAGGCTGTACAT 116247 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 || || || ||||| || ||||| || || || || |||||| | ||||| | | Sbjct 116246 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCCGCGAC 116187 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 ||| || ||| | || | | |||| | ||| || || || ||||| ||| || Sbjct 116186 CTGGACCTCTTTCATGAACCTTCCTGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGC 116127 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-T 33135 ||| || || | || || | || || | || ||||| || ||||| ||| || | Sbjct 116126 AAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTTAG-GGCTTCGAATT 116068 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33195 || || | || | ||| || || || | ||||| || || || || ||||| | Sbjct 116067 GGAGGACGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCCGCCTTCT 116008 Query 33196 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 | ||||| | |||||| || | || || ||||| || ||| Sbjct 116007 TGTACATCTCCCAGATCTCCGGGTACTGGATTGGGAACATA 115967 >seq4704 Length=219207 Score = 104 bits (114), Expect = 3e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| |||||||| | || | |||||||| ||| |||| | | |||||||| ||| || Sbjct 5925 TCCCCCCTGATCAACATAACGAGCGGTGTCATTGAAAACCCGTAGCATTGGAACAATTCC 5866 Query 63286 ATTGGATGTACCATTGGT-CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 63344 ||| ||||| ||||| || ||| || ||||| || || ||||||||||||| || | Sbjct 5865 ATTAGATGTCCCATTTGTTCCCCGA-ATATAACTCCCTGTGGCACGAATATTGTGAACCG 5807 Query 63345 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 63404 | | ||| ||||| || || ||| ||| | || || || || || ||||| | Sbjct 5806 AGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAGGTGTCATATA 5747 Query 63405 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 |||| || || |||||||| ||||| | || || |||||| Sbjct 5746 TGCCTTCAATGCTATCATCTTTCATGCACAACAGGAAGCAGCTA 5703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633384083559600