Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6563 104 2e-17 seq9707 100 2e-16 seq8682 98.7 9e-16 >seq6563 Length=399665 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || || ||||||| ||||||||||| || Sbjct 389451 AATGCAGATTTTCGTTAAGACCCTTACAGGGAAGACCATCACCCTCGAAGTGGAGAGCTC 389392 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || |||| ||||| | ||| ||||| || || ||||| || || | Sbjct 389391 GGACACAATTGATAATGTGAAGGCAAAGATTCA-AGACAAGGAGGGCATTCCCCCAGATC 389333 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | ||||| ||||| || ||| | ||||||| | | || | | ||||||| Sbjct 389332 AGCAGAGGCTGATTTTCGCCGGGAAGCAACTCGAAGATGGTAGGACCCTCGCAGATTACA 389273 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || || ||||| || || || | ||||| | || || || |||| Sbjct 389272 ACATCCAGAAGGAATCAACCCTTCACCTTGTGCTGCGTCTGAGGGGTGGAA 389222 >seq9707 Length=1014798 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | ||||| |||| || ||| ||| Sbjct 740416 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTTGAGAGCTCT 740475 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| | || | ||| ||||| || || ||||| || ||||| Sbjct 740476 GATACGATCGACAACGTGAAGGCGAAGATTCAG-GACAAGGAGGGCATTCCCCCGGACCA 740534 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || || || |||| ||||||| | | |||||||| Sbjct 740535 GCAGCGTCTCATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGCACTCTTGCTGATTACAA 740594 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 |||||| || || || || || || Sbjct 740595 TATTCAGAAGGAGTCTACCCTCCA 740618 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || | || || | ||||| ||| || Sbjct 739504 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACTATAACCCTAGAAGTCGAGAGCTCC 739563 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| || | || || || ||||| ||||| || || Sbjct 739564 GACACGATCGACAACGTCA---AAGCCAAGATCCAG-GATAAGGAAGGAATTCCGCCGGA 739619 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || || |||||||| || || || || | || || | | |||||| Sbjct 739620 TCAGCAGAGGCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGAACCCTAGCCGATTA 739679 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||| || || || || ||||| ||| | ||||| ||||| Sbjct 739680 CAATATCCAGAAGGAGTCAACGCTCCATCTGGTGCTCAGGCT 739721 >seq8682 Length=358022 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | ||||| ||| ||||||| | || || || || Sbjct 101082 AATGCAAATCTTTGTTAAGACCCTCACCGGAAAAACCATCACCTTGGAGGTTGAAAGTTC 101023 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || |||| || || | ||| ||||| || || ||||| || |||| Sbjct 101022 CGACACCATTGATAATGTGAAAGCCAAGATTCAG-GACAAGGAGGGAATTCCCCCAGACC 100964 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || |||||||||||||| | || |||| || || ||| ||| |||| Sbjct 100963 AGCAGAGGTTGATCTTTGCCGGCAAACAGCTCGAGGATGGACGTACCCTGGCCGACTACA 100904 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGT 25207 | || || || || || || || || || || Sbjct 100903 ACATCCAGAAGGAGTCAACCCTCCACTTGGT 100873 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||||||| | || || || || Sbjct 100853 ATGCAGATTTTTGTTAAGACCCTCACTGGCAAGACCATCACATTGGAGGTTGAAAGCTCA 100794 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| ||||| || || ||||| || || Sbjct 100793 GACACCATTGA--CAATGTCAAGGCCAAGATTCAA-GACAAGGAGGGCATTCCCCCAGAT 100737 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||||||||| | ||||||| || || ||| ||| ||| Sbjct 100736 CAGCAGAGGTTGATCTTTGCCGGCAAACAGCTCGAAGATGGGCGTACCCTGGCCGACTAC 100677 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || || || || || || || || || Sbjct 100676 AACATCCAGAAGGAGTCGACCCTTCACTTGGT 100645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433162693628315