Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4946 136 8e-27 seq11292 93.3 9e-14 seq9848 93.3 9e-14 seq8026 93.3 9e-14 seq4588 91.5 3e-13 seq771 91.5 3e-13 seq11263 87.8 4e-12 seq7806 87.8 4e-12 seq8878 86.0 1e-11 seq4230 84.2 4e-11 >seq4946 Length=106594 Score = 136 bits (150), Expect = 8e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 |||||||| |||| |||||||| ||||| || | ||||| || || | | Sbjct 16320 TCTATTCCTTCAATGGTTGATGGCCTGAAGCCGGGTCAAAGAAAGATACTGTTCTGCTCT 16261 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||||| ||||| | ||| ||||| ||||| ||||||||||||||||||||||| ||| Sbjct 16260 TTCAAGAGGAACTTTGTTAAAGAAGCAAAGGTTGCTCAGTTTTCTGGTTATGTATCTGAA 16201 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 ||| | ||||| || |||||||||||||| ||| | || | || ||||| ||| Sbjct 16200 CATTCAGCTTACCACCATGGTGAGCAGAGTCTTGCTGGTACTATCATTGGAATGGCGCAG 16141 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 || | ||||| || ||||| || ||| | || | || || || |||||||| Sbjct 16140 GATTTCGTGGGTAGCAACAATATTAACCTTCTTATGCCAAATGGACAGTTTGG 16088 >seq11292 Length=738477 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 222662 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 222603 Query 142563 CCCCAC 142568 |||||| Sbjct 222602 CCCCAC 222597 >seq9848 Length=867669 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 709222 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 709281 Query 142563 CCCCAC 142568 |||||| Sbjct 709282 CCCCAC 709287 >seq8026 Length=978627 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 315003 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 315062 Query 142563 CCCCAC 142568 |||||| Sbjct 315063 CCCCAC 315068 >seq4588 Length=278095 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 139496 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 139437 Query 142564 CCCAC 142568 ||||| Sbjct 139436 CCCAC 139432 >seq771 Length=227240 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 72801 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 72742 Query 142564 CCCAC 142568 ||||| Sbjct 72741 CCCAC 72737 >seq11263 Length=329385 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 169316 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 169257 Query 142563 CCCCAC 142568 |||||| Sbjct 169256 CCCCAC 169251 >seq7806 Length=438884 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 194037 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 194096 Query 142563 CCCCAC 142568 |||||| Sbjct 194097 CCCCAC 194102 >seq8878 Length=750635 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 652007 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 652066 Query 142564 CCCAC 142568 ||||| Sbjct 652067 CCCAC 652071 >seq4230 Length=1343068 Score = 84.2 bits (92), Expect = 4e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||| ||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 973149 AGCCCGTCTAGCACAGTCGGTAGAGCGCAAG-CTCTTAACCTTGTGGTCGTGGGTTCGAG 973091 Query 142563 CCCCAC 142568 |||||| Sbjct 973090 CCCCAC 973085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027424592154141