Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11707 325 7e-84 >seq11707 Length=330502 Score = 325 bits (360), Expect = 7e-84 Identities = 594/863 (69%), Gaps = 10/863 (1%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || ||| ||| |||||| ||||||||||||||| | |||| |||||||||| Sbjct 115977 ATCCAGTACCCGGAGATCTGGGAGATGTACAAGAAGGCGGAAGCCTCCTTCTGGACCGCC 116036 Query 42345 GAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 |||||| | || || || ||||| | || | | || | || | |||| || Sbjct 116037 GAGGAGGTCGATCTCTCCCAGGACGTCCTCCAATTCGAAGCC-CTAACCCCCGACGAGAA 116095 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 | ||| ||| || | || |||||||| |||||||| |||||||| ||| ||||| Sbjct 116096 GCACTTCATCACCCACGTCCTCGCCTTCTTTGCCGCCTCCGACGGCATCGTCCTAGAGAA 116155 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || ||||||||||||||||| ||| | ||||| ||| |||||| ||||| Sbjct 116156 TCTCGCAGGAAGGTTCATGAAAGAGGTCCAGGTCGCGGAGGCCCGCGCCTTCTATGGCTT 116215 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||||| ||||| |||||| | ||||| ||| ||||| | || || | | ||||| Sbjct 116216 CCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTGGAGTCTTACAT 116275 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | |||| ||| ||| | | | || ||| | || || || || | || ||||| Sbjct 116276 CAAGGATTCCGCTGAGAAGACCCGCCTCTTCCACGCAATCGACACCGTCCCTTGCATTGC 116335 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 |||||||| | ||||| ||| ||||||||| || |||| | || | |||| | Sbjct 116336 CAAGAAGGCCCAGTGGGCCCTCCGCTGGATCGATGGTTCCGA---GTCCTTTGCCGAGCG 116392 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 | | ||||| | ||||||||| ||||||||||| || |||| |||| || Sbjct 116393 CATCATCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGTGCCATTTT 116452 Query 42764 CTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||||||||| || || || ||||| |||||||||||||| ||||| || ||| | Sbjct 116453 CTGGCTCAAGAAGCGGGGGTTAATGCCGGGACTCACCTTCTCCAACGAGCTGATCTCGCG 116512 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 |||||||| ||||| | || || |||||||| || | ||| || ||| ||| | || Sbjct 116513 AGACGAGGGCCTGCACTGCGATTTCGCCTGCCTTCTCTACTC---CCTCCTGAGGAAGAA 116569 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || ||||||| ||| ||| ||| || | || ||||||||||||| |||||| Sbjct 116570 GCTGAGCGAGGAGCGAGTCAAGGCTATCGTCCGCAACGCGGTGGAGATCGAGAGGGAGTT 116629 Query 42944 CCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 | | ||||| |||||| | ||||||| |||||| || | ||| || ||| Sbjct 116630 TGTGTGCGACGCGCTG-CCGTGTGCGTTGGTCGGGATGAACGGCGCGTTGATGAGCCAGT 116688 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACA 43062 ||||| ||| ||||||||||| ||| || | | | || | | | ||| Sbjct 116689 ACATCGAGTTCGTCGCCGACCGGCTCTTGGGTGCGCTTGGGTGCGGGAAGGTGTACGGTG 116748 Query 43063 CGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCG 43122 | ||| || || | |||||| ||||||||| |||| ||||||||||| |||| Sbjct 116749 TTCAAAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAGGGGAAGACCAACTTCTTCG 116808 Query 43123 AGAAGCGCGTCGCCGACTACCAG 43145 ||||| | || | || |||||| Sbjct 116809 AGAAGAGGGTGGGTGAGTACCAG 116831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943969715483760