Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6147 96.9 3e-15 seq9707 93.3 3e-14 seq6563 87.8 1e-12 >seq6147 Length=2276951 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || |||||||| || || ||| ||||||||| |||||||| || || Sbjct 1403066 CCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1403007 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| ||||| || || ||||||||||| ||| ||| Sbjct 1403006 AGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGA 1402947 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | || ||| |||||| || || ||| || | || | | || | |||||| Sbjct 1402946 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG---TCGATGGTGTCGGAGGATTCG 1402890 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 1402889 ACCTCGAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 1402840 >seq9707 Length=1014798 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||||||||| || |||||||||||||| || ||||| || || Sbjct 740414 CCTCCACGAAGACGAAGCACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCG 740355 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | ||||| ||||| || ||||| |||||||| ||| || Sbjct 740354 AGGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 740295 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | | ||| |||||| || || ||||| | | | || | || | ||| Sbjct 740294 ATCCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCG-AGCTCTCGAC 740236 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || |||||||||||||| ||||| Sbjct 740235 CTCGAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 740188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||||||||| ||||| ||||||||| || |||||||| || | ||| Sbjct 739721 AGCCTGAGCACCAGATGGAGCGTTGACTCCTTCTGGATATTGTAATCGGCTAGGGTTCGG 739662 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| ||||| ||||||||||| || ||||| | |||||||||| Sbjct 739661 CCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCC 739617 >seq6563 Length=399665 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| ||||||||||||||||||||| ||||| ||| Sbjct 389005 AGACGGAGAACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAA-AGTCCT 389063 Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | ||||||| ||||| || ||||| ||||| | |||||| || ||| | || ||| Sbjct 389064 TCCATCGTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGCGGGATGCCCTC 389123 Query 34029 TTTGTCCATAATTTT 34043 |||||| ||| || Sbjct 389124 CTTGTCCTGAATCTT 389138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396910928263402