Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8682 111 2e-19 seq6147 109 5e-19 seq11707 107 2e-18 seq10231 105 7e-18 seq9707 105 7e-18 >seq8682 Length=358022 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | |||||||||||||||||||| ||| | || || ||||||| Sbjct 101329 ACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCAAGGGTTCGGCCGTCCTCG 101388 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 || || || |||| |||| || | ||| |||||||| || ||||| || ||||| || Sbjct 101389 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTC-TTG 101447 Query 138526 ATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | | || | ||| | | || | |||||| | |||||||||| || | || || Sbjct 101448 AATCTTAGCTTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTT 101507 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| |||||||| ||||| |||||||| Sbjct 101508 GCCAGTGAGAGTTTTCACAAAGATCTGCAT 101537 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| || || | | |||||||||| || |||||||||||| | Sbjct 100855 CCACCACGGAGACGCAAAACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCC 100914 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| ||||| |||| | |||| | | ||| ||||| || || Sbjct 100915 AGGGTACGTCCATCCTCGAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 100974 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | ||| | | || | |||||||| || || Sbjct 100975 ATTCCCTCCTTGTC-CTGAATCTTGGCTTTCACATTATCAATGGTGTCGGAACTTTCAAC 101033 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || || || || ||||| || ||||| Sbjct 101034 CTCCAAGGTGATGGTTTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 101081 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || | | ||||||||| || ||||||| | Sbjct 100204 GACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCGTCCTCGAGCTGCTTACCGGCA 100263 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | ||| ||||| || || || || || ||||| ||| ||| || | | Sbjct 100264 AAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACA 100323 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| ||||| | || | ||| || || || || || || Sbjct 100324 TTG-TCAATGGTGTCCGAGCTCTCGACCTCCAAGGTGATCGTCTTCCCGGTAAGGGTCTT 100382 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 100383 CACAAAAATCTGCAT 100397 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| || || | | | |||||||| || |||||||||||| | Sbjct 100627 CCACCACGTAGACGCAAAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 100686 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || ||||| ||||| |||| | |||| | | ||| || || || || Sbjct 100687 AGGGTACGCCCATCTTCGAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 100746 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || |||| || | |||||| | || | Sbjct 100747 ATGCCCTCCTTGTC-TTGAATCTTGGCCTTGACATTG-TCAATGGTGTCTGAGCTTTCAA 100804 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| || || || |||||||||||||| Sbjct 100805 CCTCCAATGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAAATCTGCAT 100853 >seq6147 Length=2276951 Score = 109 bits (120), Expect = 5e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||||| ||||||||| || || |||| Sbjct 1403033 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCG 1402974 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 1402973 AAGATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 1402914 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| || || ||||||| || | || ||||| || || ||||| Sbjct 1402913 TTG-TCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATGGTCTTACCCGTTAGGGTTTT 1402855 Query 138600 TACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 1402854 CACGAAGATCTGCATGG 1402838 >seq11707 Length=330502 Score = 107 bits (118), Expect = 2e-18 Identities = 339/516 (66%), Gaps = 12/516 (2%) Strand=Plus/Plus Query 52325 CGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGC 52384 ||| || ||| || ||| ||||| |||||||| | |||||||| | ||| Sbjct 116321 CGTCCCTTGCATTGCCAAGAAGGCCCAGTGGGCCCTCCGCTGGATCGATGGTT---CCGA 116377 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 | | ||||||||||| | |||||||| |||||||| | || || ||||| || Sbjct 116378 GTCCTTTGCCGAGCGCATCATCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCCGGAAG 116437 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| ||||| || | | || | | || ||||||| || || || ||| ||| Sbjct 116438 CTTCTGTGCCATTTTCTGGCTCAAGAAGCGGGGGTTAATGCCGGGACTCACCTTCTCCAA 116497 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGAC 52564 |||| |||| ||||| ||||| || |||||| || || || ||||| |||| | Sbjct 116498 CGAGCTGATCTCGCGAGACGAGGGCCTGCACTGCGATTTCGCCTGCCTTCTCTACT---C 116554 Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGC-ATGTTCAAGGAGGCGGTGG 52623 | | ||| | || || ||| ||| | || || || | ||||||| Sbjct 116555 CCTCCTGAGGAAGAAGCTGAGCGAGGAG-CGAGTCAAGGCTATCGTCCGCAACGCGGTGG 116613 Query 52624 CTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG-CG 52682 ||||| | ||||||| | | |||||||||| | | || | || ||||||| || Sbjct 116614 AGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGTGCGTTGGTCGGGATGAACGGCG 116673 Query 52683 CAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTT-GGTGCAGCTCGGGCA 52741 | || ||| || ||||||||||||| || || || || || || ||||| ||| ||| Sbjct 116674 C-GTTGATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTCTTGGGTGC-GCTTGGGTG 116731 Query 52742 GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801 ||| | | | || || |||||||| | ||| | || ||| | |||| Sbjct 116732 CGGGAAGGTGTACGGTGTTCAAAACCCGTTTGATTGGATGGAGCTGATCTCGTTGCAGGG 116791 Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||||||||| | || || ||||| Sbjct 116792 GAAGACCAACTTCTTCGAGAAGAGGGTGGGTGAGTA 116827 >seq10231 Length=688147 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| |||||| | || || ||||||||| ||||| |||| Sbjct 310338 GACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCGTCCTCGAGCTGTTTTCCGGCG 310397 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| ||||| || ||||| ||||| ||| || || | | Sbjct 310398 AAGATCAGGCGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACA 310457 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||| | ||||||||||| | || | || || || || || ||||| Sbjct 310458 TTGT-CGATGGTGTCAGAGGACTCCACCTCTAGGGTTATAGTCTTGCCCGTTAGGGTTTT 310516 Query 138600 TACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 310517 CACGAAGATCTGCATGG 310533 >seq9707 Length=1014798 Score = 105 bits (116), Expect = 7e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 138382 CCGCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAG 138441 |||| |||||| || | ||| | ||| | ||| | | |||||||| || ||||||||| Sbjct 725491 CCGCCGCCGCCGCGGAGACGAAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAG 725432 Query 138442 TCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCC 138501 ||| | || || ||| ||||| ||||| |||| |||| |||||||| |||||| Sbjct 725431 TCGGCGAGGGTTCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCC 725372 Query 138502 GGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGAC 138561 || || || || || ||||| ||| || || | | || | |||||||| | Sbjct 725371 GGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTC 725312 Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||||| || | || || || || || ||||| || || |||||||| Sbjct 725311 TCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 725259 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || || ||||||||| | || ||| ||||||||| || || |||| | Sbjct 740379 CTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 740320 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| |||||||| ||||||||||| || || || ||||| || | || | |||| | Sbjct 740319 GATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTC-CTGGATCTTGGCCTTAACGT 740261 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||| | ||| ||||||| || | ||| || || || || ||||| Sbjct 740260 TG-TCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTTTTC 740202 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 740201 ACAAAGATCTGCAT 740188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496068231132720