Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq11707 138 1e-27 seq3944 86.0 8e-12 >seq11707 Length=330502 Score = 138 bits (152), Expect = 1e-27 Identities = 380/569 (67%), Gaps = 19/569 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || |||| ||||||||||||||| |||||||| | | ||| |||||| Sbjct 116828 GTACTCACCCACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATCAGCTCCAT 116769 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTG-TTGGCAC-CCCAATCTGTTTGAGGAGA 127348 ||||||| ||||| |||| || | || | | ||||| | | ||| Sbjct 116768 CCAATCAAACGGGTT--TTGAACACCGTACACCTTCCCGCACCCAAGCGCACCCAAGAGC 116711 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||||| |||| | | |||||| |||| | | Sbjct 116710 CGGTCGGCGACGAACTCGATGTACTGGCTCATCAACGCGCCGTTCATCCCGACCAACGCA 116651 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || |||||||| | | ||| || |||| || ||||| || | || ||||| || Sbjct 116650 CACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTTGCGGACGATAGCC 116591 Query 127469 T-GAATAGTGTCCACCC-CAGGTCTATTGC---GTAAAGTCTTGAAGAGTTCCACAGCAA 127523 | || | | ||| | | ||| | | || | | | | | || || || || | Sbjct 116590 TTGACTCGC-TCCTCGCTCAGCT-TCTTCCTCAGGAGGGAGTAGAGAAGG--CAG-GCGA 116536 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || ||| || |||||||| || ||||| || || || |||||| || || |||| Sbjct 116535 AATCGCAGTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCA 116476 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 | | ||||||||||| | ||||||||| ||||| || || |||||||||||||||| Sbjct 116475 TTAACCCCCGCTTCTTGAGCCAGAAAATGGCACAGAAGCTTCCGGAGAAGAAGATCCCCT 116416 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCAC 127702 | || || ||||| || | | |||||||||||||| ||| || ||| | ||| Sbjct 116415 CGACGCAAGCGAAGGCGATGATGCGCTCGGCAAAGGACTCGGAAC----CATCGATCCAG 116360 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762 | |||||||| ||||| || | || || |||||||| | ||| || | ||||| Sbjct 116359 CGGAGGGCCCACTGGGCCTTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTGGAAGAGG 116300 Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTA 127791 |||| || | | ||| |||||||| Sbjct 116299 CGGGTCTTCTCAGCGGAATCCTTGATGTA 116271 >seq3944 Length=1040735 Score = 86.0 bits (94), Expect = 8e-12 Identities = 186/276 (67%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| |||||||| || || || || || || | ||||||||| | Sbjct 998912 AACCCATCCATCTCCGTCAAGAGCTGGTTAATAGTCTGCTCTCTCTCATCATTCCCACCT 998971 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | ||| | || ||||| ||||| || |||||||| || || ||| Sbjct 998972 CCAAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAACACAATGCAC 999031 Query 12912 GGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || | ||| || || || || | ||| | ||||||| || || || ||||| Sbjct 999032 GG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTCGACGCCCCAACTCCCAC 999090 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| ||||||||| | | || | || || ||| || || || ||| || || Sbjct 999091 AAACAACTCCACAAACTCCGAAGCCGCGCACGAGAAGAACGGCACTCCGGCTTCTCCGGC 999150 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || ||||| | || ||||| || || ||||| Sbjct 999151 CACCGCCCGGGCCAAAAGAGTCTTTCCGGTACCTGG 999186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613267157639160