Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11707 134 2e-26 seq3944 131 2e-25 seq6949 111 2e-19 >seq11707 Length=330502 Score = 134 bits (148), Expect = 2e-26 Identities = 188/262 (72%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 || || |||||| |||||||||| | ||||| | || ||| | || || || || Sbjct 116271 TACATCAAGGATTCCGCTGAGAAGACCCGCCTCTTCCACGCAATCGACACCGTCCCTTGC 116330 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT-TCCTTTGC 102178 ||| ||||| || | ||||| | ||| | ||| || || |||||||| Sbjct 116331 ATTGCCAAGAAGGCCCAGTGGGCCCTCCGCTGGATCGATG----GTTCCGAGTCCTTTGC 116386 Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 ||||| || |||| || || || || ||||| ||||||||||| || |||||| || Sbjct 116387 CGAGCGCATCATCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGTGC 116446 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 |||| |||||||||||||| || | ||||| || ||| ||||||||||||||| || Sbjct 116447 CATTTTCTGGCTCAAGAAGCGGGGGTTAATGCCGGGACTCACCTTCTCCAACGAGCTGAT 116506 Query 102299 CTCTCGTGACGAGGGACTCCAC 102320 ||| || |||||||| || ||| Sbjct 116507 CTCGCGAGACGAGGGCCTGCAC 116528 >seq3944 Length=1040735 Score = 131 bits (144), Expect = 2e-25 Identities = 258/376 (69%), Gaps = 12/376 (3%) Strand=Plus/Plus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||| || || | || || || || |||||| |||||| | |||| | || || Sbjct 998818 CTGACGGTCGAACCTCCCCGGCCGCAGCAGCGCGGAATCAAGAACATCAGGCCTGTTAGT 998877 Query 15941 TGCGGCGATGACAACAATACCTG--TTTCGTTATCAAAACCATCCATCTCTGTCAAAAGC 15998 ||||| | |||| | ||| | || | | ||| ||||||||||| ||||| ||| Sbjct 998878 GGCGGCCAACACAATGACACCCGAATTCCCCGA--AAACCCATCCATCTCCGTCAAGAGC 998935 Query 15999 TGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTT 16058 ||||||||||| || || | ||||||||| | | |||||| | | ||| | Sbjct 998936 TGGTTAATAGTCTGCTCTCTCTCATCATTCCCACCTCCAAGACCAGCCCCTCTCTGCCTC 998995 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--T 16116 |||||||||||||||||||||||||| || ||||| || ||||| || || | Sbjct 998996 CCCACGGCATCAATCTCATCAATGAACACAATGCACGG--CGCTTTCGACTTCGCCTTCT 999053 Query 16117 CAAAGAGATCCCGTACACGCTTGGCGCCC--ACACCAACAAACATCTCCACAAAGTTTGC 16174 | || | ||||| ||| || | ||||| || || ||||||| ||||||||| | | Sbjct 999054 CGAACAAATCCC--TCACTCTCGACGCCCCAACTCCCACAAACAACTCCACAAACTCCGA 999111 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 || | || || ||| || || | ||| || || | || ||||| | |||||| Sbjct 999112 AGCCGCGCACGAGAAGAACGGCACTCCGGCTTCTCCGGCCACCGCCCGGGCCAAAAGAGT 999171 Query 16235 CTTACCCGTACCTGGC 16250 ||| || ||||||||| Sbjct 999172 CTTTCCGGTACCTGGC 999187 >seq6949 Length=744727 Score = 111 bits (122), Expect = 2e-19 Identities = 268/401 (67%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 15936 TTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCA 15993 || ||||| || || |||| || || |||| | || ||||||| ||||| ||||| | Sbjct 115996 TTTGTTGCAGCAATAACAATGATTCCAGTGTTACCTT--CAAAACCGTCCATTTCTGTTA 116053 Query 15994 AAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTT 16053 |||||||||||| || ||||| | |||||| || || | ||||| || | || Sbjct 116054 AAAGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCCTCCACCAATACCAGTACCTCTTT 116113 Query 16054 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 16113 | ||| || |||||||| ||||||| || || ||||| || ||| || || Sbjct 116114 GACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTGGCCT 116173 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 || || ||||| |||||||| || || || ||||||||||| || ||||| | | Sbjct 116174 TTTTGAAAAGATCACGTACACGAGAAGCACCAACTCCAACAAACATTTCAACAAACTCAG 116233 Query 16174 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | | |||| || || || ||| || ||| || ||||| || ||| || || Sbjct 116234 AACCTG-AGATTGAGAAAAATGGAACACCAGCTTCCCCAGCAATTGCCTTGGCTAGCAGG 116292 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 16292 ||||| || || || || || | || || |||| ||||| || ||| | Sbjct 116293 GTCTTTCCAGTTCCAGGGGGGCCAACAAGAAGAACACCCTTAGGAATGCGAGCCCCAACT 116352 Query 16293 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | | | |||||||||| ||| | ||| ||||| | ||| Sbjct 116353 GCGGTGAACCTCTCAGGTTTCTTCAAAAACTCCACCACCTC 116393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620499526776720