Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3944 114 2e-20 seq6949 104 3e-17 seq11707 100 3e-16 seq4704 96.9 4e-15 >seq3944 Length=1040735 Score = 114 bits (126), Expect = 2e-20 Identities = 252/373 (68%), Gaps = 6/373 (2%) Strand=Plus/Plus Query 9188 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9247 || ||| || || | || || || || |||||| |||||| | |||| | || || Sbjct 998818 CTGACGGTCGAACCTCCCCGGCCGCAGCAGCGCGGAATCAAGAACATCAGGCCTGTTAGT 998877 Query 9248 CGCGGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9305 ||||| | |||| | ||| | || | | ||| ||||||||||| ||||| || Sbjct 998878 GGCGGCCAACACAATGACACCCGAATTCCCCGA--AAACCCATCCATCTCCGTCAAGAGC 998935 Query 9306 TGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTT 9365 ||||||||||| || || | ||||||||| | | |||||| | | ||| | Sbjct 998936 TGGTTAATAGTCTGCTCTCTCTCATCATTCCCACCTCCAAGACCAGCCCCTCTCTGCCTC 998995 Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC-GGGCGATTTC 9424 |||||||||||||||||||||||||| ||||| || || | ||| | || | || Sbjct 998996 CCCACGGCATCAATCTCATCAATGAACACAATGCACGG-CGCTTTCGACTTCGCCTTCTC 999054 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9484 || | ||| | || || || || || || ||||||| ||||||||| | | || Sbjct 999055 GAACAAATCCCTCACTCTCGACGCCCCAACTCCCACAAACAACTCCACAAACTCCGAAGC 999114 Query 9485 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 | || || ||| || || | ||| || || | || ||||| | ||||||||| Sbjct 999115 CGCGCACGAGAAGAACGGCACTCCGGCTTCTCCGGCCACCGCCCGGGCCAAAAGAGTCTT 999174 Query 9545 ACCCGTACCTGGC 9557 || ||||||||| Sbjct 999175 TCCGGTACCTGGC 999187 >seq6949 Length=744727 Score = 104 bits (114), Expect = 3e-17 Identities = 264/399 (66%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 9243 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || || || || || |||| || || || | | |||||||| ||||| ||||| ||| Sbjct 115996 TTTGTTGCAGCAATAACAATGATTCCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAA 116055 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9362 || ||||||| || ||||| | |||||| || || | ||||| || | ||| Sbjct 116056 AGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCCTCCACCAATACCAGTACCTCTTTGA 116115 Query 9363 TTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422 ||| || |||||||| ||||||| || ||||| || || ||| || ||| || Sbjct 116116 CGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTGGCCTTT 116175 Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482 | || ||||| || || | || || || ||||||||||| || ||||| | | Sbjct 116176 TTGAAAAGATCACGTACACGAGAAGCACCAACTCCAACAAACATTTCAACAAACTCAGAA 116235 Query 9483 GCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9541 | | | |||| || || || ||| || ||| || ||||| || ||| || || || Sbjct 116236 CCTG-AGATTGAGAAAAATGGAACACCAGCTTCCCCAGCAATTGCCTTGGCTAGCAGGGT 116294 Query 9542 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCC 9601 ||| || || || || || | || || ||||| ||||| || ||| | | Sbjct 116295 CTTTCCAGTTCCAGGGGGGCCAACAAGAAGAACACCCTTAGGAATGCGAGCCCCAACTGC 116354 Query 9602 AAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | | |||||||||| ||| | ||| ||||| | ||| Sbjct 116355 GGTGAACCTCTCAGGTTTCTTCAAAAACTCCACCACCTC 116393 >seq11707 Length=330502 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| ||||| || || || || || |||||| || || ||||| | || Sbjct 116528 GTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCATTAACCC 116469 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| |||| || ||||| |||||||||||||| ||||| || || Sbjct 116468 CCGCTTCTTGAGCCAGAAAATGGCACAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCA 116409 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || || | | ||||||||| ||||| Sbjct 116408 AGCGAAGGCGATGATGCGCTCGGCAAAGGA 116379 >seq4704 Length=219207 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 107163 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 107222 ||| ||| || |||||||| || | |||||| ||||| || | |||||| | ||| | Sbjct 5605 ACACCTGAGGCCTTGGTGTTCCCGAATTGAAAAGGGTGGGGGAGGCGTGAGTAAACCACC 5546 Query 107223 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 107282 || |||||| ||| ||||||| | |||| |||||||| ||| ||| || || | Sbjct 5545 GCTGAGACATCATGTGATATGTCTTGATAGCAGATTCAATGTCCTCCTTGTGAATTCCAA 5486 Query 107283 TGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAA 107342 | || | ||| ||||| | ||| || |||| || | | || | | | || || Sbjct 5485 CAGAAACCCTCATCAACATATGTTGAGGCCTTTCAATAACCTTCCCTTGCACC--TTCAA 5428 Query 107343 GA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || || | ||||||||||||||| ||||||||| || | ||| ||||||| Sbjct 5427 GAGGTATGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 5374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589749962637240