Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq8682 111 1e-19 seq9707 100 2e-16 seq6563 96.9 3e-15 seq6147 86.0 5e-12 >seq8682 Length=358022 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| |||||||| |||||||| | || |||| Sbjct 101320 AGGCGGAGCACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCAAGGGTTCGG 101379 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| | ||| || |||| || | |||||| Sbjct 101380 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCC 101439 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | | || || |||||||| | || Sbjct 101440 TTGTCTTGAATCTTAGCTTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTG 101499 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | |||||| ||||| ||||||||| Sbjct 101500 ATGGTCTTGCCAGTGAGAGTTTTCACAAAGATCTGCATC 101538 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| ||||| ||||| || || || ||| || || || ||||| || | Sbjct 100627 CCACCACGTAGACGCAAAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 100686 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | ||| || |||||||| |||| | ||| ||||| | |||| Sbjct 100687 AGGGTACGCCCATCTTCGAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 100746 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | | ||||| || ||| Sbjct 100747 ATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAGCTTTCAACC 100806 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || || || || | || || ||||||||||||||| Sbjct 100807 TCCAATGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAAATCTGCATC 100854 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 48610 CGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCT 48669 |||| || | ||||||||||||||| ||||| | ||| || || | ||||| |||||||| Sbjct 100241 CGTCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCT 100300 Query 48670 TGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAA 48729 |||| |||||| || ||| | | | || || ||| ||||||| || | Sbjct 100301 TGTCCTGGATCTTTGCCTTCACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAAGGTGA 100360 Query 48730 TCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || | || || |||||||||||||| Sbjct 100361 TCGTCTTCCCGGTAAGGGTCTTCACAAAAATCTGCAT 100397 >seq9707 Length=1014798 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || |||||||||||||||| ||| | ||| | || ||||||||||| || ||||| Sbjct 740607 CTCCTTCTGAATATTGTAATCAGCAAGAGTGCGACCATCCTCCAACTGCTTCCCTGCAAA 740548 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || ||||| || |||| ||||| |||||||||||| |||||| Sbjct 740547 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTT 740500 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | |||| | ||||| ||| ||||| ||| || || ||||||||||| | | Sbjct 739730 CCGCCGCGAAGCCTGAGCACCAGATGGAGCGTTGACTCCTTCTGGATATTGTAATCGGCT 739671 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| ||||||||||| ||||| || ||||| | ||| ||||||| ||| Sbjct 739670 AGGGTTCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGCGGA 739611 Query 48660 ACGCCCTCCTTGTC 48673 | || ||||| || Sbjct 739610 ATTCCTTCCTTATC 739597 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || |||||||| || || |||||||| || | || | || Sbjct 740405 AGACGAAGCACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGC 740346 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| ||||| || |||| |||| |||||| Sbjct 740345 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCC 740286 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || ||| ||||| | || Sbjct 740285 TTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTG 740226 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || | ||||| ||||| ||||||||| Sbjct 740225 ATCGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATC 740187 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || |||||||| || || ||||||||||| | || | ||| |||| ||| Sbjct 739940 ACCAGATGGAGAGTGCTCTCCTTCTGGATATTGTAATCGGCGAGGGTACGACCGTCCTCC 739881 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| | || ||||| | |||| || |||||||| Sbjct 739880 AGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCGGGAGGAATTCCTTCCTTGTCTTGG 739821 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || ||||||||| | ||| ||||| || Sbjct 739820 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAACTCTCCACCTCAAGCGTGATCGTCTTG 739761 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 739760 CCGGTGAGGGTCTTGACGAAGATCTGCAT 739732 >seq6563 Length=399665 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| |||||||||| | | | | | ||||||| |||| Sbjct 389020 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCGTCCAGCTGC 389079 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||| | ||| || || | || | |||||||||||| |||||| Sbjct 389080 TTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTC 389139 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || || ||| ||||||| || || || || || ||| Sbjct 389140 GCCTTGACATTATCAATAGTGTCCGAGCTCTCGACCTCCAAAGTGATGGTCTTCCCAGTC 389199 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| |||||||| Sbjct 389200 AAGGTCTTGACAAAGATCTGCAT 389222 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| |||||||| |||||||||| || | | | | || || | |||| Sbjct 389476 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTCCTACCATCCTCAAGCTGC 389535 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || ||||| | ||| || || | || | |||||||||||| ||||||| Sbjct 389536 TTCCCTGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTT 389595 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | ||||| |||||| || | || || || || || || Sbjct 389596 GCCTTCACATTATCAATCGTGTCTGAGCTCTCCACTTCAAGGGTGATGGTCTTCCCTGTA 389655 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || |||||||||||||| Sbjct 389656 AGGGTCTTGACAAAAATCTGCAT 389678 >seq6147 Length=2276951 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| ||||| || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 1403068 CGCCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1403009 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||| ||||| || || || ||||| || |||| | Sbjct 1403008 CGAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 1402949 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| |||||||||||| ||||| || ||| | | | || || | || | Sbjct 1402948 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGATTCGA 1402889 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 |||| | || || || || ||||| | ||||| || || |||||||| || Sbjct 1402888 CCTCGAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGT 1402837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380792279567223