Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq11707 190 4e-43 >seq11707 Length=330502 Score = 190 bits (210), Expect = 4e-43 Identities = 565/861 (66%), Gaps = 18/861 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| || ||||| |||||||| |||||||||| ||||||||| ||| Sbjct 116831 CTGGTACTCACCCACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATCAGCTC 116772 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||| | || ||||| | |||||| | | |||| | || | | Sbjct 116771 CATCCAATCAAACGGGTTTTGAACACCGTACACCT-TCCCGCACCCAAGCGCACCCAAGA 116713 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || |||||| |||||||||| | ||| | | | |||||| || | | | Sbjct 116712 GCCGGTCGGCGACGAACTCGATGTACTGGCTCATCAACGCGCCGTTCATCCCGACCAACG 116653 Query 48018 -ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 |||||| || || | | ||||||| |||| |||| ||| || | | || || Sbjct 116652 CACACGG-CAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTTGCGGACGATA 116594 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 ||| || || ||| | || || | |||| | || ||||| | |||||| Sbjct 116593 GCCTTGACTCGCTCCTCGCTCAGCTTCTTCCTCAGGAG---GGAGTAGAGAAGGCAGGCG 116537 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 || || | ||||| ||| ||||| || ||| ||| ||||||||||| ||| || ||| Sbjct 116536 AAATCGCAGTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGC 116477 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | ||||| || |||||||||||||| || ||| || ||||||||||| ||| Sbjct 116476 ATTAACCCCCGCTTCTTGAGCCAGAAAATGGCACAGAAGCTTCCGGAGAAGAAGATCCCC 116417 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || ||||| ||| ||| | ||| | || || || || ||||||| Sbjct 116416 TCGACGCAAGCGAAGGCGATGATGCGCTCGGCAAAGGACTCGGAACCATC---GATCCAG 116360 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC 48376 || ||||| | |||||||| ||||| || | || || || || ||||||| Sbjct 116359 CGGAGGGCCCACTGGGCCTTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTGGAAGAGG 116300 Query 48377 T---TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 |||| |||| | | ||| | || | || || ||||||||| Sbjct 116299 CGGGTCTT---CTCAGCGGAATCCTTGATGTAAGACTCCAGAAGGAGGCTGTACATCTCG 116243 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || ||||||||||| || |||||||| | |||||| ||||| Sbjct 116242 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCCGCGACCTGG 116183 Query 48494 ACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || ||| | ||| || ||| || |||||||| ||| || || || || || ||||| Sbjct 116182 ACCTCTTTCATGAACCT-TCCTGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGCAAA 116124 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 |||||| ||||| || | | ||| || ||||| | |||| || || | | | Sbjct 116123 GAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTTAGGGCTTCGAATTGGAG 116064 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 ||||| | | || || || || || | ||||||||||| || || || ||||| Sbjct 116063 GACGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCCGCCTTCTTGTA 116004 Query 48673 CATGCCCCATATGTCCGGATA 48693 ||| |||| || ||||| || Sbjct 116003 CATCTCCCAGATCTCCGGGTA 115983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931168326147840