Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3944 105 8e-18 seq11707 100 3e-16 seq4704 96.9 4e-15 seq6949 87.8 2e-12 >seq3944 Length=1040735 Score = 105 bits (116), Expect = 8e-18 Identities = 249/372 (67%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||| | ||| ||||||||| |||||||| || | ||||| || | || || ||| Sbjct 999201 CTTCTTGTGGGCCCGCCAGGTACCGGAAAGACTCTTTTGGCCCGGGCGGTGGCCGGAGAA 999142 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | || || ||| || |||| | || | | ||||||||| ||||||| || || Sbjct 999141 GCCGGAGTGCCGTTCTTCTCGTGCGCGGCTTCGGAGTTTGTGGAGTTGTTTGTGGGAGTT 999082 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGT 175478 || || || || | ||| | || || | || | ||| | || || ||||| Sbjct 999081 GGGGCGTCGAGAGTGAGGGATTTGTTCGAGAAGGCGAAGTCGAAAGCG-CCGTGCATTGT 999023 Query 175479 CTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAA 175538 |||||||||||||||||||| ||||| | ||| | | |||||| | | || Sbjct 999022 GTTCATTGATGAGATTGATGCCGTGGGGAGGCAGAGAGGGGCTGGTCTTGGAGGTGGGAA 998963 Query 175539 TGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT---GACAA 175595 ||| |||||||| || || ||||| || || | || ||||||||||| ||| | || Sbjct 998962 TGATGAGAGAGAGCAGACTATTAACCAGCTCTTGACGGAGATGGATGGGTTTTCGGGGAA 998903 Query 175596 TGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCT 175655 | | || ||||||| | || |||||||| | ||| | |||||| ||| || Sbjct 998902 TTCGGGTGTCATTGTG---TTGGCCGCCACTAACAGGCCTGATGTTCTTGATTCCGCGCT 998846 Query 175656 CCTTCGCCCGGG 175667 || || ||||| Sbjct 998845 GCTGCGGCCGGG 998834 >seq11707 Length=330502 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||| ||||||||| | | || || || || || ||||| |||||||||||||| Sbjct 116379 TCCTTTGCCGAGCGCATCATCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCCGGAAGC 116438 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||||| || |||| ||| | ||||||||||| | ||||| || || |||||| || Sbjct 116439 TTCTGTGCCATTTTCTGGCTCAAGAAGCGGGGGTTAATGCCGGGACTCACCTTCTCCAAC 116498 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || ||||| ||||| || ||| Sbjct 116499 GAGCTGATCTCGCGAGACGAGGGCCTGCAC 116528 >seq4704 Length=219207 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| ||| | || ||||||||| ||||||||||||||| | || |||| || Sbjct 5374 CGGGACTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCATACCTCTTGAA- 5432 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | | | || | | || |||| || || | ||||| ||| |||| | | || | Sbjct 5433 -GGTGCAAGGGAAGGTTATTGAAAGGCCTCAACATATGTTGATGAGGGTTTCTGTTGGAA 5491 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| ||| |||||||| |||| | ||||||| ||| |||||| || | || Sbjct 5492 TTCACAAGGAGGACATTGAATCTGCTATCAAGACATATCACATGATGTCTCAGCGGTGGT 5551 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGT 75359 | | |||||| | || ||||| |||||| | || |||||||| || ||| ||| Sbjct 5552 TTACTCACGCCTCCCCCACCCTTTTCAATTCGGGAACACCAAGGCCTCAGGTGT 5605 >seq6949 Length=744727 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || ||||||||||| || ||| || || || || ||| | ||| ||||| Sbjct 116309 CCTGGAACTGGAAAGACCCTGCTAGCCAAGGCAATTGCTGGGGAAGCTGGTGTTCCATTT 116250 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | ||| | | | ||||| || ||||||||||| || ||||| | || Sbjct 116249 TTCTCAAT-CTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGAGTTGGTGCTTCTCGTGT 116191 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||||| || ||| ||| || ||| || || ||||| || ||||||| || Sbjct 116190 ACGTGATCTTTTCAAAAAGGCCAAGGAGAATGCGCCTTGCATTGTGTTTGTTGATGAAAT 116131 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||| || || ||| | | ||||| | || ||| || || |||||||| Sbjct 116130 TGATGCTGTTGGACGTCAAAGAGGTACTGGTATTGGTGGAGGAAACGATGAAAGAGAACA 116071 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGT 175613 || |||| || || | || || ||||| || ||||| | | ||||| || | || Sbjct 116070 GACCCTTAACCAGCTTTTAACAGAAATGGACGGTTTTGAAGGTAACACTGGAATCATTGT 116011 Query 175614 TATTGCGGCCACTAA 175628 |||||| || || || Sbjct 116010 TATTGCTGCAACAAA 115996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596336184686880