Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6949 141 3e-28 seq31300 109 2e-18 seq9170 104 7e-17 seq9881 89.7 2e-12 >seq6949 Length=744727 Score = 141 bits (156), Expect = 3e-28 Identities = 344/512 (67%), Gaps = 22/512 (4%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 |||||| ||||| |||| | ||| || | ||| | || || |||||||||||||| Sbjct 115944 CCTATCGAACCTTCCAGGCCTCAATAAGGCGGAGTCGAGAATGTCTGCTCTGTTTGTTGC 116003 Query 288909 TGCCAATACAACAATAGATTC---GGTTTGCTT-AAATCCATCCATACTTGTTAAAATTT 288964 | |||| |||||| ||||| ||| ||| ||| || ||||| |||||||| | Sbjct 116004 AG-CAAT--AACAAT-GATTCCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAAAGCT 116059 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttt 289024 | ||||| || ||||| |||||||| ||| |||| |||| | | | | | Sbjct 116060 GGTTAAGGGTCTGTTCTCTTTCATCGTTT---CCTC------CACCAATACCAGTACCTC 116110 Query 289025 ttttA---CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCG 289081 ||| | ||||||||||||||||| |||| || | | || || | ||| | | | Sbjct 116111 TTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTGG 116170 Query 289082 CAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 | || || | || | |||||| || || |||| |||||| ||||||| ||||| | Sbjct 116171 CCTTTTTGAAAAGATCACGTACACGAGAAGCACCAACTCCAACAAACATTTCAACAAACT 116230 Query 289142 CAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 ||||| | || | |||| | |||| ||| ||||| || || | |||| | || || Sbjct 116231 CAGAACCTGAGA-TTGAGAAAAATGGAACACCAGCTTCCCCAGCAATTGCCTTGGCTAGC 116289 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 || ||||| || |||||||| || || | | ||||| ||||| || | |||||| Sbjct 116290 AGGGTCTTTCCAGTTCCAGGGGGGCCAACAAGAAGAACACCCTTAGGAATGCGAGCCCCA 116349 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | | | | ||||||| |||| ||||| || || | ||| || || | ||| Sbjct 116350 ACTGCGGTGAACCTCTCAGGTTTCTTCAAAAACTCCACCACCTCCATAAAGTCCTGCTTT 116409 Query 289321 GCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || ||||| || || |||||| | || || Sbjct 116410 GCTTCATCTACCCCAGCAACATCATCGAATGT 116441 >seq31300 Length=1457403 Score = 109 bits (120), Expect = 2e-18 Identities = 214/314 (68%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| || | | | ||||| || || ||||| ||| ||||| Sbjct 490199 CATAATATCCTCCATAGCTTTCACCAGTCTCCGCTGGATGTACCCAGTCTCAGAAGTTTT 490258 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || ||||| || ||||| | | ||||||||||||||| || || | ||||| || Sbjct 490259 CACGGCAGTATCTATAAGACCTTCTCTACCACCCATAGCATGAAAAAAGAACTCTTGTGG 490318 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || || | | | | ||| ||||||| || ||||| || ||| || ||| Sbjct 490319 GGTCAGTCCTCGCAGATACGAGTTCTCAACAAAGCCACGACTTTCTGGCCCATAATCGTC 490378 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCATCAA 302803 ||||| ||||| |||| || | | ||| | | || || || || ||||| || |||| Sbjct 490379 TTTGGTGAAGTGGGGCAATGTTC-GATCTATAAACCCATAGGGAATTCGCTTGCCCTCAA 490437 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | || ||||| |||| || | | ||||||| || || || | ||| || || || | Sbjct 490438 CATTTTGCTGCCCCACACAAGCAGTCATCTGTGAGATGTTAATGAAACTTCCTTTAGATC 490497 Query 302864 CAGCATTTACCATA 302877 | ||| | |||||| Sbjct 490498 CTGCAGTAACCATA 490511 >seq9170 Length=1112994 Score = 104 bits (114), Expect = 7e-17 Identities = 216/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC- 289088 |||| |||||||| || ||||| || | | || |||| | || || || || | Sbjct 606508 CCAATTGCATCAATCTCATCAATAAATACTATACTTGGAGCACACTGCCTTGC--TTCCT 606565 Query 289089 -AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||||| | || || | ||||| ||||| ||||||| |||| || | || || ||| Sbjct 606566 GAAATAAGTTCCTAACCCTGGATGGTCCAACACCAACAAACATCTCCATGAAATCCGAAC 606625 Query 289148 CGGATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||| | ||| ||| || ||| | ||| ||||| || | || ||||| ||| Sbjct 606626 CAGATA-TGGAAAGAAATGGCACACCAGATTCTCCTGCAGTAGCTTTTGCTAGAAGGGTC 606684 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || ||||||||||| || || | || ||| |||| || || | |||||| || | Sbjct 606685 TTTCCTGTTCCAGGAGGGCCTACCAACAGAGCTCCTTTAGGAATTTTTGCTCCCAATTCC 606744 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||||| ||| |||| | || | |||| ||| | || | |||||||| Sbjct 606745 TCATATTTCTTTGGGTTCTTGAGGAAGTGCACAAACTCCATGATCTCTTGCTTTGCCTCG 606804 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 606805 TCACAACCAGCTACATC 606821 >seq9881 Length=442070 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 251476 AAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCA 251535 ||| ||| |||||||| | |||||||||||| || |||||||| || || |||||||| Sbjct 347567 AAGTGAGCAGCACCGTGAGCAATCATACAATCGCGTTCCATTTCTCCAAAGCGAAGACCT 347508 Query 251536 CCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 ||||| |||| || |||||||| ||||| Sbjct 347507 CCATCACGAGACCGTCCCTCGGCTGGCTG 347479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471227336290437