Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11707 199 5e-45 >seq11707 Length=330502 Score = 199 bits (220), Expect = 5e-45 Identities = 222/294 (76%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||||||||||||||||||||| || ||||| | |||| || || ||| Sbjct 116242 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCATAGAAGGCGCGGGCCTCCGCGACCTGG 116183 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||||| || || || ||||| |||||||||||| |||||| || Sbjct 116182 ACCTCTTTCATGAACCTTCCTGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGCAAAG 116123 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| ||||| ||||||| | | || | | | |||| | Sbjct 116122 AAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTTAGGGCTTCGAATTGGAGG 116063 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | ||| || ||||||||||||||||||| ||||| || ||||| |||||| Sbjct 116062 ACGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCCGCCTTCTTGTAC 116003 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 |||||||| | | | |||| |||| ||||| | ||| || |||| ||||| Sbjct 116002 ATCTCCCAGATCTCCGGGTACTGGATTGGGAACA-TACAGAACCGGTCCGGGTT 115950 Score = 152 bits (168), Expect = 6e-31 Identities = 226/315 (72%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| | | |||||| ||||||||||| |||| | ||||||| Sbjct 116836 GCCTTCTGGTACTCACCCACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATC 116777 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCG-ACGC 868809 | ||||||||| |||||||| | ||| ||| |||| || |||| || | Sbjct 116776 AGCTCCATCCAATCAAACGGGTTTTGAACACCGTACACCTTCCCGCACCCAAGCGCACCC 116717 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 || || ||||||||||| |||||||||||||||| ||| | || ||||||| |||| Sbjct 116716 AAG-AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATCAACGCGCCGTTCATCCCGAC 116658 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 | ||| |||||||| |||| ||||||||| |||||||||| || || | | || Sbjct 116657 CAACGCACACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTTGCGGAC 116598 Query 868930 GATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 ||| |||| | | || || | |||| || || | | |||||| ||||||| Sbjct 116597 GAT-AGCCTTGACTCGCTCCTCGCTCAGCTTCTTCCTCAGGAGGGAGTAGAGAAGGCAGG 116539 Query 868989 CAAAGTCGCAGTGCA 869003 | || |||||||||| Sbjct 116538 CGAAATCGCAGTGCA 116524 Score = 123 bits (136), Expect = 3e-22 Identities = 176/247 (71%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 869186 TCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 869245 |||||| ||||| |||||| |||| ||| || ||||| | || |||||||||||| Sbjct 116513 TCGCGA--GATCAGCTCGTTGGAGAAGGTGAGTCCCGGCATTAACCCCCGCTTCTTGAGC 116456 Query 869246 CAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATG 869305 || || ||||| ||||| || || ||||| ||||| ||||||||| || ||| ||||| Sbjct 116455 CAGAAAATGGCACAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCAAGCGAAGGCGATG 116396 Query 869306 AGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCC 869365 | ||||||||||||| ||| || || |||||| | ||||| | |||| Sbjct 116395 ATGCGCTCGGCAAAGGACTCGGAACCATC------GATCCAGCGGAGGGCCCACTGGGCC 116342 Query 869366 TTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGG 869425 || || | | || || |||||||| ||| | |||||| || ||| || || | Sbjct 116341 TTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTGGAAGAGGCGGGTCTTCTCAGCGGAA 116282 Query 869426 TCCTTGA 869432 ||||||| Sbjct 116281 TCCTTGA 116275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104570493357417