Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11707 170 3e-36 seq10677 116 6e-20 >seq11707 Length=330502 Score = 170 bits (188), Expect = 3e-36 Identities = 229/318 (72%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| ||||| |||||| ||| ||| || ||||| | || |||||||||||| Sbjct 116513 TCGCGA--GATCAGCTCGTTGGAGAAGGTGAGTCCCGGCATTAACCCCCGCTTCTTGAGC 116456 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 || || ||||||||||| || || ||||| ||||| ||||||||| || ||| ||| | Sbjct 116455 CAGAAAATGGCACAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCAAGCGAAGGCGATG 116396 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | ||||||||||| | || || || |||||| | ||||||| ||| Sbjct 116395 ATGCGCTCGGCAAAGGACTCGGAACCATC------GATCCAGCGGAGGGCCCACTGGGCC 116342 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || || | | || || |||||||| ||| | |||||| || |||||| | | Sbjct 116341 TTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTGGAAGAGGCGGGTCTTCTCAGCGGAA 116282 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| ||| | || | ||||| ||| |||| ||||||||||| ||||||||| Sbjct 116281 TCCTTGATGTAAGACTCCAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCG 116222 Query 794647 ATCTGGAAGCCATAAAAG 794664 |||||||||||||| ||| Sbjct 116221 ATCTGGAAGCCATAGAAG 116204 Score = 154 bits (170), Expect = 2e-31 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||| | || |||||||| |||||||| | || || || ||||| |||||||| Sbjct 116198 GGCCTCCGCGACCTGGACCTCTTTCATGAACCTTCCTGCGAGATTCTCTAGGACGATGCC 116139 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| |||||| || |||||||||||||| |||| ||||| ||||||| | | || Sbjct 116138 GTCGGAGGCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTTAG 116079 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | | | |||| ||| | ||| |||||||||||||||||||| |||||||| Sbjct 116078 GGCTTCGAATTGGAGGACGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGC 116019 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| |||||||||||||| ||| |||| |||| ||||||| Sbjct 116018 TTCCGCCTTCTTGTACATCTCCCAGATCTCCGGGTACTGGATTGGGAACA 115969 Score = 150 bits (166), Expect = 3e-30 Identities = 227/313 (73%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| ||||| | | |||||| ||||||||||| |||| | |||||||| ||||||| Sbjct 116827 TACTCACCCACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAACGAGATCAGCTCCATC 116768 Query 793968 CACGGGAACGGGTT--GGCCGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGG 794024 || |||||||| | | | ||| |||| ||||||| |||| || |||| || Sbjct 116767 CAATCAAACGGGTTTTGAACACC--GTACACCTTCCCGCACCCAAGCGCACCCAAG-AGC 116711 Query 794025 CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC- 794083 |||||||||||||| || |||||||||| ||| | ||| ||||||| |||| | ||| Sbjct 116710 CGGTCGGCGACGAACTCGATGTACTGGCTCATCAACGCGCCGTTCATCCCGACCAACGCA 116651 Query 794084 CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTG 794143 ||| ||||||| |||| |||||||| |||||||||| || || | | || ||| | Sbjct 116650 CAC-GGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTTGCGGACGAT-AG 116593 Query 794144 CCTGGGCACG-TCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202 ||| | | || || | |||| | || | | |||||| |||||||| || | Sbjct 116592 CCTTGACTCGCTCCTCGCTCAGCTTCTTCCTCAGGAGGGAGTAGAGAAGGCAGGCGAAAT 116533 Query 794203 CGCAATGCAGACC 794215 |||| ||||| || Sbjct 116532 CGCAGTGCAGGCC 116520 >seq10677 Length=355497 Score = 116 bits (128), Expect = 6e-20 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 || || || |||||||| ||||| || ||||||||| |||| || || ||| ||| | Sbjct 155942 TTAGTAACAGCCTTGGTGCCCTCGGAAACGGCGTGCTTGGCGAGCTCACCGGGCAGTACG 156001 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 ||||| |||||||||||||||||||||| | ||| || |||||| | ||| Sbjct 156002 AGGCGTACGGCGGTCTGGATCTCGCGGGAGGTGATGGTCGGCTTCTTGTTGTACCTCGCG 156061 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 || | | ||||| | ||| |||| |||||||||| || |||||||||| Sbjct 156062 AGCCTGGAAGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGATC 156121 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| | ||||| || | |||||| || || ||||| || |||||| Sbjct 156122 CCCATGGCCTTGCTCGAGATCCCGATGTCGGGATGGACTTGCTTCAGGACCTTG 156175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912916769866139