Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11707 273 3e-67 seq10677 104 3e-16 seq3139 91.5 2e-12 seq11724 86.0 9e-11 >seq11707 Length=330502 Score = 273 bits (302), Expect = 3e-67 Identities = 392/545 (72%), Gaps = 12/545 (2%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 |||||| |||| || ||| ||||||| |||| |||| | ||| ||||| |||||| | Sbjct 115950 AACCCGGACCGGTTCTGTA-TGTTCCCAATCCAGTACCCGGAGATCTGGGAGATGTAC-A 116007 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 | ||||| || |||||||| |||||||||||||||||||| ||| | ||| ||| Sbjct 116008 AGAAGGCGGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTCTCCCAGGACGTCCTCC 116067 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 | | | | || | | ||||||| || ||||||| |||||||||||||| ||| Sbjct 116068 AATTCGAAGCCCTAACCCCCGACGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTTT- 116126 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 |||||| ||| |||||||| ||||| || || || | || |||||||||||||| Sbjct 116127 GCCGCCTCCGACGGCATCGTCCTAGAGAATCTCGCAGGAAGGTTCATGAAAGAGGTCCAG 116186 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | ||||| || || || || ||||||||||||||||| ||||||||||| || Sbjct 116187 GTCGCGGAGGCCCGCGCCTTCTATGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAG 116246 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | ||| ||||| | || | ||| ||||||| | | |||||| || |||||| Sbjct 116247 ATGTACAGCCTCCTTCTGGAGTCTTACATCAAGGATTCCGCTGAGAAGACCCGCCTCTTC 116306 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 | ||| |||||||| || || | | || |||||| | ||||| | |||||| Sbjct 116307 CACGCAATCGACACCGTCCCTTGCATTGCCAAGAAGGCCCAGTGGGCCCTCCGCTGGATC 116366 Query 1456153 AACAAGGAGGGCCTCGA-CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGC 1456210 || || ||| |||||||||||| || ||| ||| || |||||||||| Sbjct 116367 ------GATGGTTCCGAGTCCTTTGCCGAGCGCATCATCGCCTTCGCTTGCGTCGAGGGG 116420 Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 ||||| ||||| || || ||||| ||||| || |||||||||||||| || | ||||| Sbjct 116421 ATCTTCTTCTCCGGAAGCTTCTGTGCCATTTTCTGGCTCAAGAAGCGGGGGTTAATGCCG 116480 Query 1456271 GGTCT 1456275 || || Sbjct 116481 GGACT 116485 Score = 122 bits (134), Expect = 1e-21 Identities = 234/337 (69%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||||| || || ||||| || |||||| | | || || |||| | | ||| | Sbjct 116524 TGCACTGCGATTTCGCCTGCCTTCTCTACTCCCTCCTGAGGAAGAAGCTG---AGCGAGG 116580 Query 1456512 TGCC---CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 || |||| ||| || | | || || |||||||||| |||||||| |||| Sbjct 116581 AGCGAGTCAAGGCTATCGTCCGCAACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACG 116640 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 |||||||| ||| | |||| ||||||| | | | | ||| |||||||||| || || Sbjct 116641 CGCTGCCGTGTGCGTTGGTCGGGATGAACGGCGC-GTTGATGAGCCAGTACATCGAGTTC 116699 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688 ||||||||||| || | | ||||| || ||||| |||| ||| | |||| Sbjct 116700 -GTCGCCGACCGGCTCTTGGGTGCGCTTGGGTGCGG-GAAGGTGTACGGTGTTCAAAACC 116757 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 |||| ||||||||| |||||||| | |||| ||||||||||| |||||| | | Sbjct 116758 CGTTTGATTGGATGGAGCTGATCTCGTTGCAGGGGAAGACCAACTTCTTCGAGAAGAGGG 116817 Query 1456749 T-GGCGAGTACGCCAAGGCCGGCGTCACCGCCAAGCC 1456784 | || |||||| |||||| ||||| | |||||| Sbjct 116818 TGGGTGAGTACCAGAAGGCCTCCGTCA-TGTCAAGCC 116853 >seq10677 Length=355497 Score = 104 bits (114), Expect = 3e-16 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || ||||| || || ||| || | | ||| ||| || | |||| || Sbjct 156180 ATCTTCAAGGTCCTGAAGCAAGTCCATCCC-GA--CATCGGG--ATC-TCGAGCAAGGCC 156127 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | ||||| Sbjct 156126 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCTTCC 156067 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || ||| | | ||||||| || ||| | | |||||||||||||||||||| Sbjct 156066 AGGCTCGCGAGGTACAACAAGAAGCCGACCATCACCTCCCGCGAGATCCAGACCGCCGTA 156007 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || || |||| ||||||||| ||||||||||||| Sbjct 156006 CGCCTCGTACTGCCCGGTGAGCTCGCCAAGCACGCCGTTTCCGAGGGCACCA 155955 >seq3139 Length=64809 Score = 91.5 bits (100), Expect = 2e-12 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||||||||| ||||| || | | ||| ||| |||| |||| || Sbjct 25164 ATCTTCAAGGTTCTCAAGCAGGTCCACCCA-GA--CATCGGG--ATC-TCCAGCAAGGCC 25217 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| ||| | |||||| Sbjct 25218 ATGGGAATCATGAACAGTTTCATCAACGACATCTTCGAAAAACTCGCCCAGGAGGCCTCA 25277 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || || | | ||||||| |||||| | |||| |||||||||||||| ||| Sbjct 25278 AGGCTCGCCAGATACAACAAGAAGCCGACGATCACCTCGCGGGAGATCCAGACCGCGGTG 25337 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||||| || |||| |||||| || || ||||| |||| Sbjct 25338 AGGCTTGTGCTTCCGGGCGAGCTCGCCAAGCACGCGGTGTCTGAGGGGACCA 25389 >seq11724 Length=333865 Score = 86.0 bits (94), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||||||||| ||||| | || | ||| |||| |||| || Sbjct 12726 ATCTTCAAGGTTCTCAAGCAGGTCCACCCAGACATCGGT-----ATC-TCCAGCAAGGCC 12779 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| | |||||| Sbjct 12780 ATGGGGATCATGAACAGTTTCATCAACGACATCTTCGAAAAGCTCGCCCAGGAGGCCTCG 12839 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || || | | ||||||| |||||| | | || ||||||||||| || ||| Sbjct 12840 AGACTCGCCAGGTACAACAAGAAGCCGACGATCACCTCTCGGGAGATCCAGACGGCGGTG 12899 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| || || |||| ||||||||| || ||||| |||| Sbjct 12900 AGGCTTGTGCTTCCCGGTGAGCTCGCCAAGCACGCCGTATCTGAGGGGACCA 12951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174792161018762