Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3944 105 8e-18 seq11707 98.7 1e-15 seq4704 96.9 4e-15 seq6949 93.3 5e-14 >seq3944 Length=1040735 Score = 105 bits (116), Expect = 8e-18 Identities = 249/372 (67%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 11462 CCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACA 11521 ||||| || || || ||| |||||| | ||| | |||||||| || | |||| Sbjct 998834 CCCGGCCGCAGCAGCGCGGAATCAAGAACATCAGGCCTGTTAGTGGCGGCCAA---CACA 998890 Query 11522 ATGCCAGTCTCATTGTC---AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGT 11578 ||| || | ||| | ||| ||||||||||| || | | || ||||| || || Sbjct 998891 ATGACACCCGAATTCCCCGAAAACCCATCCATCTCCGTCAAGAGCTGGTTAATAGTCTGC 998950 Query 11579 TCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATC 11638 |||||||||||||| | | |||||| | | ||| | ||||| ||||||||| Sbjct 998951 TCTCTCTCATCATTCCCACCTCCAAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATC 999010 Query 11639 TCATCAATGAAGACAATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAAC 11697 ||||||||||| ||||| || || | ||| | || | || || | ||| | || Sbjct 999011 TCATCAATGAACACAATGCACGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCAC 999069 Query 11698 CCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAA 11757 || || || || || ||||||| ||||||||| | | || | |||| || ||| Sbjct 999070 TCTCGACGCCCCAACTCCCACAAACAACTCCACAAACTCCGAAGCCGCGCACGAGAAGAA 999129 Query 11758 TGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTT 11817 || || | ||| || || | || ||||| | || |||||||| ||||||||| Sbjct 999130 CGGCACTCCGGCTTCTCCGGCCACCGCCCGGGCCAAAAGAGTCTTTCCGGTACCTGGCGG 999189 Query 11818 ACCCGCGAGAAG 11829 ||| | ||||| Sbjct 999190 GCCCACAAGAAG 999201 >seq11707 Length=330502 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| ||||| || || || || || |||||| || || ||||| | || Sbjct 116528 GTGCAGGCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGTCCCGGCATTAACCC 116469 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| |||| || ||||| |||||||||||||| ||||| || || Sbjct 116468 CCGCTTCTTGAGCCAGAAAATGGCACAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCA 116409 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA-GCGAGACTTTGCATCAAACCATTTCATTG 122848 || || || | | ||| ||||| ||||| || || |||| | ||| | | Sbjct 116408 AGCGAAGGCGATGATGCGCTCGGCAAAGGACTCGGAAC----CATCGATCCAGCGGAGGG 116353 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCT 122908 |||| | |||||||| |||| || || || || | ||| || | || | | ||| Sbjct 116352 CCCACTGGGCCTTCTTGGCAATGCAAGGGACGGTGTCGATTGCGTGGAAGAGGCGGGTCT 116293 Query 122909 TTTCAGATCCATCCTTAATGTA 122930 | |||| |||||| ||||| Sbjct 116292 TCTCAGCGGAATCCTTGATGTA 116271 >seq4704 Length=219207 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995 ||| ||| || |||||||| || | |||||| ||||| || | |||||| | ||| | Sbjct 5605 ACACCTGAGGCCTTGGTGTTCCCGAATTGAAAAGGGTGGGGGAGGCGTGAGTAAACCACC 5546 Query 111996 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 || |||||| ||| ||||||| | |||| |||||||| ||| ||| || || | Sbjct 5545 GCTGAGACATCATGTGATATGTCTTGATAGCAGATTCAATGTCCTCCTTGTGAATTCCAA 5486 Query 112056 TTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAA 112115 | |||| ||| ||||| | || || |||| || | | || | | | || || Sbjct 5485 CAGAAACCCTCATCAACATATGTTGAGGCCTTTCAATAACCTTCCCTTGCACC--TTCAA 5428 Query 112116 GA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || || | ||||||||||||||| ||||||||| || | ||| ||||||| Sbjct 5427 GAGGTATGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 5374 >seq6949 Length=744727 Score = 93.3 bits (102), Expect = 5e-14 Identities = 211/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 || || || |||||||| | || ||||| | | ||||| || ||||| || || | Sbjct 115996 TTTGTTGCAGCAATAACAATGATTCCAGTGTTACCTTCAAAACCGTCCATTTCTGTTAAA 116055 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGC 11620 | || |||| || |||||||| ||||| ||| || | ||||| || | ||| Sbjct 116056 AGCTGGTTAAGGGTCTGTTCTCTTTCATCGTTTCCTCCACCAATACCAGTACCTCTTTGA 116115 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 || || |||||||| ||||||| || ||||| || || ||| || ||| || Sbjct 116116 CGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGCGCATTCTCCTTGGCCTTT 116175 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | || ||||| || || | ||||| || ||||||||||| || ||||| | | Sbjct 116176 TTGAAAAGATCACGTACACGAGAAGCACCAACTCCAACAAACATTTCAACAAACTCAGAA 116235 Query 11741 GCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 | ||| | || || ||||| ||| | ||| || || || || ||| || ||||| Sbjct 116236 CCTGAG-ATTGAGAAAAATGGAACACCAGCTTCCCCAGCAATTGCCTTGGCTAGCAGGGT 116294 Query 11800 CTTTCCCGTACCTGG 11814 |||||| || || || Sbjct 116295 CTTTCCAGTTCCAGG 116309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627786274629600